Pseudomonas mendocina NBRC 14162, PME1_RS18545
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCACAGAAGCTGTGGATAACTCTGTTGATCCTTCTGGGCAAATGCCGCAGCGCCACTTGTGAATGGCCTCATAGACATCTGATCATTTTCTGATCAT TCGCAGAACACCCAGCAAAAACAACAACTTGCGAAATATCGTGACAAGGCGCACAGAGCTGGTGCGTGTCTGTCGCACGCGCCTCCTGTTTGTGCATAAG CCAAAAGCTGCTGATAACCACCCCCGAAAAAGCCAGGCTCGAACGTGGCTTTACTCACGCCGACGAATGGATATAATGGCGGCCCTTCAGTGCCGGTATA GCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTGCCGGCACCATCTAATATCTAAGGTCTGCTTTCACGCAGGCCT TTTTTGTTTTTGCACTGCCCATATCCGCCGCTTGTTCATTGCACTTACCGCACTCGGATAGTGGGTATGGCGAAAGGCTAACTAGCGAGGCAATGGGCTG
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| DNA Sequence for Gene |
>PME1_RS18545
ATGCGTATTCTTATTACCGGCGGCGCCGGTTTCATCGGGTCGGCGCTGATTCGCCATCTGATTCAGGACACCGAGCACGAAGTCCTCAACCTCGACAAGC TGACCTACGCCGGCAATCTGGATTCCCTGCTGGAGATTGCGGAAAACCCACGGTACAGCTTCGTTCAGGCCGATATCGCCGATGCAGAGCGAGTCGCTAC GACGCTGAGCCAATTCCAGCCAGATGCCATCATGCACTTGGCCGCCGAGTCCCATGTCGACCGCTCCATCGATGGCCCCGCGGCCTTTATCCAGACCAAT ATCGTCGGCACCTATAGCCTGCTGGAAAGCGCACGCGCCTATTGGCTCGGTCTGAATACCGAGCGCAAGGCAGCCTTCCGCTTCCACCACATATCTACCG ACGAGGTTTACGGCGACCTGCATGGCGTCGACGACCTGTTCACCGAAACCACCCCCTACGCCCCAAGCTCGCCCTACTCGGCGAGCAAGGCTGCGTCCGA TCACCTGGTCCGTGCCTGGCAACGCACCTATGGCCTGCCGGTGCTGATCACCAACTGCTCGAACAACTATGGGCCGTACCATTTCCCGGAAAAGCTGATC CCGCTGATGATCCTCAATGCCCTGGCAGGCAAGCCGCTACCGGTCTATGGCAATGGCCAGCAGGTGCGCGACTGGCTGTACGTGGAAGATCACGCGCGCG CGCTGCTCAAGGTGGTCAGCGAAGGCAAGGTCGGCGAGACCTACAACATCGGCGGACACAACGAGCAGAAGAACCTCGATGTGGTGCGCGCCATCTGCGC CCTGCTGGAAGAACTGGCGCCACAAAAACCTGCCGGCATTGCTCGCTATGAAGATTTGATCACCTATGTGCAGGACCGTCCGGGCCACGACTTGCGCTAT GCCATCGACGCCAGCAAGATCGAACGCGAACTGGGCTGGGTGCCGCAGGAGACCTTCGACACAGGCCTGCGCAAGACGGTGCAGTGGTACCTGGACAATC TCGAATGGTGTCGCCGCGTGCAGGATGGCAGCTATCAGGGCCAGCGACTCGGCGCACTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGCTTCAATGAAGGGCATCATCCTCGCCGGCGGCTCCGGCACCCGTTTGCACCCAATCACCCTGGGCGTATCCAAGCAACTGCTGCCTATCTATGACA AGCCGATGATCTATTACCCACTGTCGGTGTTGATGCTGGCCGGCATACGTGAGGTTCTGATCATTTCCACCCCCGAAGACCTGCCCAACTTCGAGAAGAT GCTCGGCGACGGCAACCAGTTCGGCATCAGGCTGCAGTATGCCGAGCAACCTTCACCGGACGGCCTGGCCCAAGCGTTCTTGATAGGCGAGTCGTTCATC GGTAGCGATTCGGTGTGCCTGATCCTCGGCGATAACATCTTCCACGGCCAGCACTTCACCGAAAAACTGCTGCGCGCGGCCAGCCATGAAAGCGGCGCCA CCGTCTTCGGTTATTGGGTCAGCGATCCGGAGCGCTTTGGCGTGGTCGAATTCGACGACGCAGGCAACGCACTGTCGATCGAGGAAAAACCCGCAAACCC
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MRILITGGAGFIGSALIRHLIQDTEHEVLNLDKLTYAGNLDSLLEIAENPRYSFVQADIADAERVATTLSQFQPDAIMHLAAESHVDRSIDGPAAFIQTN IVGTYSLLESARAYWLGLNTERKAAFRFHHISTDEVYGDLHGVDDLFTETTPYAPSSPYSASKAASDHLVRAWQRTYGLPVLITNCSNNYGPYHFPEKLI PLMILNALAGKPLPVYGNGQQVRDWLYVEDHARALLKVVSEGKVGETYNIGGHNEQKNLDVVRAICALLEELAPQKPAGIARYEDLITYVQDRPGHDLRY AIDASKIERELGWVPQETFDTGLRKTVQWYLDNLEWCRRVQDGSYQGQRLGAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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