Pseudomonas mendocina NBRC 14162, PME1_RS20130
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NBRC 14162, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGATGTCGTTGAGAATCCACACGCGCTTGAGCGACAGCGAGGAATAGCTGGGGTAGAGCTGGCAGAAGCCGAGCAGCTTGTCTTCGTCATCGGCCAGGGC CAGGTAGATTACCGACTCCTTGCGCCGCAAGCGCTTCTCGAGAAACTTGCGCGACGACTCGGGGTAGGGCAGCTCGTTGTAGAACTCGCGGTATTTTACG AACAGCGGGGTCAACAGGTCCAGGTGCTCCAGGGTGGCTTGGACGATGCGCATGGTGGGCCTCGGCTTCTCTCTGTAATGGGGCAGGAGTGGCGATGCAG CTGTTGTGCCAGCGGTTCAGCCGATGCTGCCTGAAAGCCAGTTGAAAGCGCAATCCAAGCAAGCGTTTGATTTTCGCTTGTCCGGCAACTTGGTTTTCGC GTCCTTGTCTGAACAGGGCGCAGCAGCCGCCCGATGGGGGCTGTGCTAACCTGCGGCCATCGCTTCACCGCCCCTGCGTCGGGCTTCATAGAGGTCATTC
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| DNA Sequence for Gene |
>PME1_RS20130
ATGCATATCCATATTCTCGGCATCTGCGGCACCTTCATGGGTTCGCTCGCGGTGCTGGCCAAGGAGCTCGGCCACCGCGTCACCGGTTCCGACGCCAATG TCTATCCGCCCATGAGCACCCAGCTCGAAGCCCAGGGCATCGAGTTGATGCAGGGCTTTGACCCGGCGCACCTGCAGCCGGCGCCCGATCTGGTGGTGGT CGGCAACGCCATGAGCCGCGGAAATCCGGCGGTGGAGTACGTACTCAACAAGGGGCTGCCCTATGTGTCCGGCCCGCAGTGGCTGGCCGACCACGTGCTG CAGGGACGCTGGGTGATGGCGGTGGCCGGTACCCACGGCAAGACCAGCAGCTCGAGCATGCTGGCCTGGGTGTTGGAGCACGCCGGCATGGCGCCGGGCT TCCTGATTGGCGGTGTGCCGCAGAACTTCGGGATTTCCGCGCGGCTGGGCGATACGCCGTTCTTCGTGGTCGAGGCCGACGAGTACGACAGCGCCTTCTT CGACAAGCGCAGCAAGTTCGTTCACTACCGCCCACGCACGGCGATCCTCAACAACCTCGAATTCGATCATGCGGATATCTTTCCTGACCTGGCCGCTATC GAACGGCAATTCCACCACCTGGTGCGGATCATTCCGAGCGAAGGCCTGGTTATCCACCCAGCTAACGAAACCGCGCTGGCGCGGGTGATCCAGATGGGCT GCTGGACGCCGGTGCAGACCACCGGTGAAGGCGGGCAATGGCAGGCGCGCCTGCTCAGCGCTGACGGCTCGCGCTTCGAAGTGAGCTTCGAGGGCAAGGT CGAGGGCACGGTTGAGTGGAACCTGACCGGCCAACACAACGTTGCCAACGCCATGGCCGTACTCGCGGCGGCGCGTCATGTCGGTGTGGTGCCGGCGCTG GGTATCGAGGCGCTGGGCCAGTTCATCAACGCCAAGCGGCGTATGGAAAAGGTCGCCGAGGTGAACGGTGTGACCATTTTCGATGACTTCGCCCACCACC CCACGGCCATCGCCACCACGCTCGATGGCCTGCGCAAGCGTGTCGGCGACGATACCCAAGTGATCGCCGTGATCGAACCGCGCTCCAATTCCATGAAGCT CGGCGCCCATCGTGACGGCCTGGCCGAATCCGCCGAGCACGCCGATGTGGTGTTCTGGTATGCGCCGCCGAATCTTGGCTGGGACCTGGCCGCCACCGTG GCGCAGGCGCGTAATCCGACGCGGGTATGCGACTCGCTGGAGTCGATCATCGACGGCGTGAAGGCCCTGGCGCGCCCCGGCACCCAGGTGGTAATCATGA GCAACGGCGGCTTCGGCGGCCTGCATGGCAAGCTGGCAGCAGCGCTGGAGGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGTCTGGTCCGGAACGCATCACCCTGGCCATGACCGGCGCCTCGGGCGCGCAATATGGCCTGCGCCTGCTCGACTGTCTGGTGCAGGAGGAGCGTGAAG TGCACTTCCTGATTTCCAAGGCCGCGCAACTGGTGATGGCCACCGAGACCGACGTGGCGTTGCCGGCCAAGCCGCAGTCCATGGCGCAGTTCCTCACCGA ATACACCGGCGCGGCGCCAGGGCAGATCCGCGTCTATGGCAAGGAAGACTGGATGGCCCCGGCCGCCTCCGGCTCCGGCGCGCCAACGGCCATGGTGATA GTGCCGTGCAGCACCGGCACCTTGTCGGCGATCGCTGCGGGGGCCTGTAACAATCTGATCGAGCGCGCCGCCGACGTGGCGCTCAAGGAGCGTCGCCAGC TGATTCTGGTGCCGCGTGAGGCGCCGTATTCGAGCATCCATCTGGAGAACATGCTCAAGCTGTCGAATCTGGGTGTGACCATTCTGCCGGCTTCACCCGG
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLEAQGIELMQGFDPAHLQPAPDLVVVGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVMAVAGTHGKTSSSSMLAWVLEHAGMAPGFLIGGVPQNFGISARLGDTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRIIPSEGLVIHPANETALARVIQMGCWTPVQTTGEGGQWQARLLSADGSRFEVSFEGKVEGTVEWNLTGQHNVANAMAVLAAARHVGVVPAL GIEALGQFINAKRRMEKVAEVNGVTIFDDFAHHPTAIATTLDGLRKRVGDDTQVIAVIEPRSNSMKLGAHRDGLAESAEHADVVFWYAPPNLGWDLAATV AQARNPTRVCDSLESIIDGVKALARPGTQVVIMSNGGFGGLHGKLAAALEG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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