Pseudomonas mediterranea CFBP 5447, N005_RS24865
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold36, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTCCAGCCAGAGGTCGCAGAGCCGGCCGGCGAAGGGCAGGCGCCATTGCTGGTCGCGGCTGGTGTGCGTGCGGCCTTGCAACACGTCGTTATAAATCG GCGCGCTGACGCTTTTGAGTTCAGGCCATGCGGTGTGGGTCGGCTGGCCGAACGCCTGGGGATGTTTATCGCCGGCCAGTCGGGAAAAGGCGTCGTTGTA GAAGTGGATCAGTTGCGGCCCCCACAGTAAGGCCATCGGCATCGGCGAGTTCAGCACGATGTCCACGGCGGTGCGCAGGCTCTGGGGCCAGGTTTCAGCG GCGCCCAGCGGGCTGGAACTCCAGTCCAGTCGCTCGATCAGGCGCTGTGTGCCGCTGCTGGCGGGTGTTGCGTTCATCACGGAATCCCTGGGTGGCGTGT CGCGTCTACTATCCTCTCAGGAAGGCAAGCGCGGGTTGGTCTGCAGAGGTACGTGCTCGGGTCAGCTTGTTTCATTGATGTCTCGCGGAAATTTCAGTCC
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| DNA Sequence for Gene |
>N005_RS24865
ATGGAAATCGATCCCTTGTTACGCATCCTGGCCAGCCAGGAAGGTTCCGATCTTTACTTGTCCACCGGGGCGCCGCCGTGTGCCAAATTCGAAGGCGTGC TCAAGCCCCTGGGCAACCAGGCGTTCAAGGTCGGTGACATTGCCGGGCTCGCCGAGTCTCTGATGGACGCCGAACAGCGCCTTGAGTTCGATCGGGAATT GGAAATGAACCTGGCCATATCCCTCTCGGGTGTCGGGCGATTCCGGGTCAATATCTTCAAGCAGCGCAATGACGTGTCCATGGTGATCCGCAACGTCAAG CTGGACATCCCGCGTTTCGAGGACCTGAAACTGCCCAAGGTGCTGCTCGACACCATCATGCAGAAACAGGGGCTGATGCTGTTCGTCGGCGCGACGGGGT CAGGCAAATCCACTTCCCTGGCGGCGCTGATCGACTATCGCAATCGCAACAGCAGCGGCCACATCATCACCATCGAAGACCCGGTGGAGTACATCCACCG GCACAAGAAGTCGATCATCAACCAGCGGGAGGTCGGTGTCGACACCCGCAGTTTCCATGCCGCCCTCAAGAACACCCTGCGCCAGGCGCCGGATGTGGTG CTGATCGGCGAAATTCGCGACCGGGAAACCATGGAGCACGCCCTGGCCTTTGCCGACACCGGGCACTTGGTGATTTCCACCTTGCACGCCCACAACGCCA ACCAGGCCCTGGATCGGGTGATCAACTTCTTCCCCGAGGAACGCCGGCCGCAGCTGTTGAGCGACCTGGGCAACAACCTCCAGGCCTTCGTGTCCCAGCG CCTGGTGCGCACCCGCACCGGCCAGCGCCGGGCCGCGGTGGAAGTCATGCTCGGCTCGCCCACGGTGGCCGACCTGATCCGGCGCAACGAGCTGGGCGAG CTCAAGGGCATCATGGAAAAGTCGGAGGAACTGGGCATGCAGACCTTTGACCAAGCCCTGTTCAAGCTGGTGGTGGAGGGAGTGCTGGATGAGGAGGAGG CCCTGAAGAACGCCGATTCGGCGAACAACCTGCGGTTGCGGTTGAAACTGCATGCGGAGTCGGGCGCCGCGCCTGCGGCCGATCCGGCGGCGGGGGAGTG GGGGTTGATGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGGGTTTGGGACATTCCCTGTGGCGAGGGGATTTATCCCCGCTGGGCTGCGCAGCAGCCCTAAATCCAGACACTTCGGTGTATCAGACAGACTTGTGTT TGAGGGTATTGGGGGGCTGCTTCGCAGCCCAACGGGGGTAAACCCCCTCGCCACAGAAAAGCAGTTTTGTGGGGTGCCTAGGTGGCCAGCTCCGGCCGAT CCCGAAACTGCTCCAGCGCCTCCGGGTTGGCCAGGGCGTCGGTGTTTTTCACCGCTTCGCCATGCACCACATTGCGTACCGCCAGCTCTACCACCTTGCC ACTGATCGTCCGCGGTATATCGCTGACCGCCAGGATCTTCGCCGGTACATGGCGCGGCGTGGTGTTGGCCCGGATGACCTGGCGGATCCGCTGCTCCAGG GCGTCATCCAGGACCACGCCCTCTCGCAGCCGCACGAACAACACCACCCGCACATCCCCCTGCCATTGCTGGCCGATGGCGACGCTGTCCAGCACCTGTT
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| Amino Acid Sequence |
>twitching motility protein PilT
MEIDPLLRILASQEGSDLYLSTGAPPCAKFEGVLKPLGNQAFKVGDIAGLAESLMDAEQRLEFDRELEMNLAISLSGVGRFRVNIFKQRNDVSMVIRNVK LDIPRFEDLKLPKVLLDTIMQKQGLMLFVGATGSGKSTSLAALIDYRNRNSSGHIITIEDPVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVV LIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRVINFFPEERRPQLLSDLGNNLQAFVSQRLVRTRTGQRRAAVEVMLGSPTVADLIRRNELGE LKGIMEKSEELGMQTFDQALFKLVVEGVLDEEEALKNADSANNLRLRLKLHAESGAAPAADPAAGEWGLMD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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