Pseudomonas mediterranea CFBP 5447, N005_RS22195
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold36, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGACTGTTTCAGCGCACGCTGGACCTCGAGCATCTGCTCGGCGTAGTTGAGCACCTTGAAACCTTCGGGCGTCAGCGATACGCCCCGGGAATCGCGCA CGAACAGGCGCAGGCCCAACTCGTCCTCCAACGATGCGATCCGGGCGGAAATCGCGGCCTGGGTGCTGAACATCTTTTCGGCGGTCAGGCTGAAGCTTTG CAGGCGTGCCACCCAGACGAAGGTTTCGAGGAACTTGAGGTTCATGACGGTTCTCTTGGTGCTTGTAGTTCTTATGATTGCAATTGTTACTCCAGATCGG GCCATTGGAGGCATCAATTTTTCTTATGTCCGATCTGCCTTTTTTCCCGTTTGACGCTTTCCAGGCGTGACGCGAAGAATCCACCCCGACGACGCAGCTC ACTGCGCCCGTGTCCCAACGACAACGTCTTCACACAAGAATAACGAGGCGCCCGCAAAGCCCCCCGAGAGGGTTCGCTCGCGCCGATAAAAGGAGCACGC
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| DNA Sequence for Gene |
>N005_RS22195
ATGCAACATTTCAGATCCTTCCCGCGGATATACGCCCCAATCGGCACGGTGCTTGGCTTGAGCCTGATCGGCATGCCTGCTGCCCGGGCGGATTTCATCG CCGACAGCAAAGGCAGCCTTGAGGCGCGCAACTTCTACTTCAACCGCGACTTCCGCCAGGAAGGTTCACGGGACAAGGCCGAGGAGTGGGCCCAGGGCTT TTTGCTGCGGATGGAGTCGGGCTATACCGCCGGCACTGTCGGTTTCGGCCTGGATGTCTTGGGCATGGCCGGTTTCAAGCTGGATTCCGGTGGCGGTACG GCGGGCACCAACCTGTTGCCGGCGGATTTGTCCGGAGGGTCGCAAGACCGTTACGGCGAACTGGGCCTGACCGCCAAGGTGCGCGTGTCCAACAGCACCC TCAAGGCGGGAACGCTGCAGATCAAGGACCCGGTGGTGAGCTCCAACGATACGCGGCTGTTGCCGGCGACGTTCAAGGGCGGACTGCTGAATGTGCAGGA AATCGATCGATTGAAGCTGACCGGTGGGCAGTTCACCCAGATCAACGTCGTCGACTCCACCGATTACCAGGACATGACCGCGAACCGCATCGGCGGCACC AGCGACAAGTTCCAATTCGCCGGAGCGGACTATCAGTTCCTGCCCAACCTCACGGCGCAGTACCGTTACGGGAAACTGCAGGACATCTACCAGCAGAACT ACCTCGGGTTCGTCCATACCCTGGACCTGGGGGCCGGTCAATCGTTCAAGAGCGACGTGCGTTATTCGCGCAGCACCGAGGACGGCAATTTCCGCAACAT CGACAACCAGGCCTTTGGCGCACTGTTTACCTACAGTCTGGGTGGTCATGCCGTGGGCCTGGGTTACCAGCGCATGAGCGGCGACGATCCTTTCCCGTAC ATCAGCCGCAGCGACCCGTATCTGGTCAACTTCGTCCAGATCGGCGACTTCGCCAACATCGACGAGCGCTCCTGGCAAGCCCGCTATGACTACAACTTTG CCGCCCTCGGTGTACCCGGGTTGACGTTCATGACCCGCTACATCTCCGGTGACAACGTGCAGCGCGCTGCGCCGGGGGAGGGCAAGGAGTGGGAACGCAA TACCGACATTGCCTACGTGGTGCAGGACGGCACGTTGAAAGGGCTCGGGTTGAAATGGCGCAACGCCTCGGTGCGTTCGAACTTTGGCAATGACCTGGAT GAGAACCGGTTGATTGTCAGTTACACCATGGCGCTCTGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAGGACGGCCTCAAGGCGCTACTCAAATGAGCGGCGCCAAATATAAGTTATTAAATATAATCAATTTTCCAGTTTTCGTGATTTTCAACCGAGAGGCC AGGTCGTCGGATGACGACGGGAGCTGGTTGTTCACTTGCGCGACATAATCCGTCTTTAGATGCTGTAAGCCATGACTTTCCGGATTTGACGGCCATTCAT CAGCCTGCAAAAAATAAGGAAACCTATGGGTTTCCTTTGTCCTGTTTTTTGTCATACTCCACCCTGCAAGTCGGCAGAGGTGCCTGCTTGCCCGGTATTA GTACTGGCTAATAACAATTCCACCAGCAGGTATCCACGCCATGAGTATTCTCGGTCACCACGCTACAGCGGCTCCCGCCGAACAACTGGCTACCGCCCTC GCACGAATGAAGCAGGCCCACCTGGACGAAGGGCCCGCAAGCCTGGCGTTGCGCCGTGACCGTCTGGATCGGGCGATTGCCCTGTTGCTGGAAAACCGTG
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| Amino Acid Sequence |
>porin
MQHFRSFPRIYAPIGTVLGLSLIGMPAARADFIADSKGSLEARNFYFNRDFRQEGSRDKAEEWAQGFLLRMESGYTAGTVGFGLDVLGMAGFKLDSGGGT AGTNLLPADLSGGSQDRYGELGLTAKVRVSNSTLKAGTLQIKDPVVSSNDTRLLPATFKGGLLNVQEIDRLKLTGGQFTQINVVDSTDYQDMTANRIGGT SDKFQFAGADYQFLPNLTAQYRYGKLQDIYQQNYLGFVHTLDLGAGQSFKSDVRYSRSTEDGNFRNIDNQAFGALFTYSLGGHAVGLGYQRMSGDDPFPY ISRSDPYLVNFVQIGDFANIDERSWQARYDYNFAALGVPGLTFMTRYISGDNVQRAAPGEGKEWERNTDIAYVVQDGTLKGLGLKWRNASVRSNFGNDLD ENRLIVSYTMALW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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