Pseudomonas mediterranea CFBP 5447, N005_RS19575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold35, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCCGCGAGGAGCAGGTCGATCCGCTGACCCTCAAGGGTTCCTATGCCGGGGCCATGGGCCTGCCGCAATTCATGCCCAGCAGTTTCCGCGCCTATG CAGTGGATTTCGATGGCGATGGCCACATCAATATCTGGACCAACCCGACCGATGCCATCGGTAGTGTTGCCAGCTATTTCAAGCGCCACGGCTGGGAAGC CGGCCAACCGGTGGTCAGCCGTGCCGACGTGCGCGGCGAGCAGGTGGACGAAGGCCTGAGCGAGGGCATCGAGCCGACGAAAACCGTCGGGGAGTTGCGG GCGCTGGGCTGGTCGAGTCATGATGCGCTGCGTGACGACATGCCCGTCACCGCCATCCGCCTGGAAGGCGAGCAGGGCCCTGAATACTGGATGGGCCTGA AGAATTTCTACGCAATTACGCGTTATAACCGCAGTGTGATGTACGCCATGGCTGTGCATCAACTGTCTGAAGAGCTGGTCAAAGCACGGGGCGTCAAATA
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| DNA Sequence for Gene |
>N005_RS19575
ATGCAGGCATTGCCTACCTATCAACCCCTGAAAGCCAGGCCCTTGAAGTTCGTGGCACTGGCTGCGCTGTCGCTGTTGGTCGTCAGTTGTTCGACCAGTC GCGCACCGACCCAGAAAAACACCACCGCCGTGCGCGCCATGCCGGGCCTGGACATCAACCGTGCCCACAAGGACGGCGCGCCGTGGTGGGACGTGGATGT CTCGCGCATTCCCGACGCCACCCCGACCCTGCACACCGGTCCCTACAAGGCCAACCCGTATACCGTGCTGGGCAAGACCTATTTCCCGATGGCCGACTCC AAGACCTACGTCGCCTCGGGCACGGCGTCCTGGTACGGCACCAAGTTCCATGGCCAGAACACCGCCAATGGCGAAGTGTATGACCTGTACGGCATGAGCG CGGCCCACAAGACCTTGCCGTTGCCCAGTTACGTGCGGGTGACCAACCTGGACAACAACAAGAGCGTGATCCTGCGGGTCAATGACCGTGGGCCGTTCTA TTCCGACCGTATCATCGACCTGTCGTATGCGGCGGCGAAAAAACTCGGTTACGCTGAAATCGGCACCGCCCGGGTCAAGGTCGAGGGCATCGACCCGCAG GAATGGTGGGCCCAGCGTGGCCGTCCGGCGCCTTTGATGCTCAACGAGCCAAAAGTGGCGCAAAATGCCGCGCCAACGGTGACGGCGTCCACCGGTACGG TCGAACAATGGACACCGCCGCCGCAGCAACACGCCGCGGCCGTCGTGCCAGTGCAGTTGGAGGCAAAAAAAAACGCTTCTGCAACAGCGTCTGGCCAGTA TCTGCAAGTGGGCGCGTTCGCCAACCCGGACGCTGCCGAACTGCTCCGGTCGAAGCTGAGCTCGATGGTGAGCGCTCCGGTGTTCATCAGCTCGATCGTG CGCAACCAGCAGACACTGCATCGGGTGCGCCTGGGGCCGATCGGTTCTCCGGGTGAAGTCCAGCAGGTGCAGAACAGCGTGCGCCTGGCCAATCTCGGTT CGCCGAGCCTGGTCACCGCCGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGATTGAAGGCCCGCTTGCGGTTCGAGCGGGTCCGGTTGTTGGCTCCATGAATAACAAAAGCCCGGCAAGGGATGTGAGTGAGCAACTTAATACGCGGC GGCCCGTCAAGAAGGCTGCCTGTTTAGTATTGCCTCCGGGCAGTCCATTAGCGATTTCGAGAGACGGATGAACATTACCACCTTTGCCAAACGCCTTTGC CTGTTAGTCCCGCTGCTTCTTTCACCTGCCGCGTTCGCGGTCGAGATGATGCCGTCGCCTCCACAATTGGCGGCCAAGGCCTTTGTGCTCATGGACGCCA GCAGCGGCAATGTGCTGGTCGAGAGCAACGGTGACCAGCGCCTGCCACCGGCCAGCCTGACCAAGCTGATGACCGCCTACATCGCGACCCTGGAGATCCG TCGCGGCCAGATCGGCGAGAACGATCCGGTGACCGTCAGCGAAAACGCCTGGCGCACCGGCGGTTCGCGGATGTTCATCAAGGTCGGTTCGCAGGTGACC
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| Amino Acid Sequence |
>lipoprotein
MQALPTYQPLKARPLKFVALAALSLLVVSCSTSRAPTQKNTTAVRAMPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGPYKANPYTVLGKTYFPMADS KTYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVRVTNLDNNKSVILRVNDRGPFYSDRIIDLSYAAAKKLGYAEIGTARVKVEGIDPQ EWWAQRGRPAPLMLNEPKVAQNAAPTVTASTGTVEQWTPPPQQHAAAVVPVQLEAKKNASATASGQYLQVGAFANPDAAELLRSKLSSMVSAPVFISSIV RNQQTLHRVRLGPIGSPGEVQQVQNSVRLANLGSPSLVTAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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