Strain | Pseudomonas mediterranea CFBP 5447 scaffold35, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CGGGCAAGGCCCCGGGGCTTTCATCTGGTGACAGACGAGTTGCTCGCCGGCCTGCCTGAACTCCGGGCGTGTCGTGTTGGTCTGTTGCATCTGTGGCTGC AGCATACCTCGGCCTCGTTGACCATCAACGAGAACGCCGATCCGGCGGTACGTCGAGACTTCGAACGATTTTTCAATCGGCTGATCCCACAAGGAACTGC CGACTATGAGCACAACGACGAAGGCCTGGACGACCTCCCGGCGCACTTCAAGGCCAGCGTGCTGGGATGTCAGCTCAGCCTGCCGATAACGGACGGGCGA CTGGCACTGGGTACCTGGCAAGGTGTTTATCTGGGCGAGCACCGTGATCATGGCGGTGCTCGTAAAGTCCTCGCCACCTTGTACGGTGAAGGGGCATGAC CGCCGATTGCCGGTGGATGTTGAATTTTTTCTGGCAGCCTTCGACAGATGGCGTAGCTGGGCTATAACTAATCTGCTTTTCGCAAGTCATGAGGTAGAAC
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DNA Sequence for Gene |
>N005_RS18685
ATGAGCGACGATGATCTGGAAAACGACGACCTCGAAGTAGGTGAAGAAGACGAGGCCGAAGACGGCTTGGAAGCGGCGGCTGAAGACGTTGCAGACGACG ATGGCGCCGATATACCGGCCCCGACCGCCAAGGGTAAGGCCAAGGCTGCGGTGTCGGTCGACGAATTGCCGAGCGTAGAAGCCAAGAACAAGGAGCGTGA TGCGCTCGCCAAGGCCATGGAAGAATTCCTGGCCAGGGGTGGAAAGGTGCAGGAAGTGGAGGCCAATGTGGTTGCCGATCCGCCCAAGAAGCCTGACAAC AAGTACGGCAGCCGCCCTATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTTCTGCTTCCTGCTTGCTGAAAAAGCCCGCCGTCGTCGCGGGCTTTTTCATGGGCGCTGATTGGCTTTCAGGCTATGCGCAACCTTGTGGGAGCGAGCC TGCTCGCGATAGCGGTATGTCAGTTACATGAAGGTCACTGGCACGCCCTCATCGCGAGCAGGCTCGCTCCCACAGGGTTAAGTAGTGCTCTTGGATTCAG CCCTGGCTATGCCATCCCGCCAACAACTCCGGCAACTCGGTCAGGCTGCGAATCTCTGCATCCGGCAAGTGGTCGGCATCCCAGGCCTTGCCTGCCGGGT TAAACCACACCGCCCGCAGGCCGGCCTGTTGGGCGCCAGCGATATCATCGCCGGGATGATCGCCAACGTGTACGGCGGTCTGCGCCGTGGCGCCACCGCG TTGCAAGGCTTCGTGGAACAGCCGCGCATCGGGTTTGGCGATGCCGATGTCCTCGGCGCACAGTGCGAACTTGAAGTAGTCCGCCAACCCCAGGCGACGC
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Amino Acid Sequence |
>hypothetical protein
MSDDDLENDDLEVGEEDEAEDGLEAAAEDVADDDGADIPAPTAKGKAKAAVSVDELPSVEAKNKERDALAKAMEEFLARGGKVQEVEANVVADPPKKPDN KYGSRPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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