Pseudomonas mediterranea CFBP 5447, N005_RS17595
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold35, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTCACCGACTGCACCGACGCGATGACCATCGTGCGGGAAGAAATCTTCGGCCCGGTGATGGCAATCCTCAGCTACGAAACCGAAGAAGAAGTGATCCGT CGCGCCAACGACACCGAGTTCGGCCTGGCCGCCGGCGTCGTGACCCGCGACCTGAACCGCGCCCACCGCGTGATCCACCAACTGGAAGCCGGTATCTGCT GGATCAACGCCTGGGGCGAGTCCGACGCGAAGATGCCGGTGGGTGGCTACAAGCAGTCGGGCGTGGGTCGCGAGAACGGAATCAGCTCGCTGAACAACTT CACGCGCATCAAATCGGTACAGGTTGAAATGGGCGAGTACGTGTCGGTGTTCTGATCGGCGTCCGCCCATGAGGCCGTCATCGCGAGCAGGCTCGCTCCC ACATGAGTTCCCATTCCAATGTGGGAGCGAGCCTGCTCGCGATGGAGTGCAAAGCGCTCCCCGGCCCTGACCTGAAGCCAATTAAAAGAGGGTGCATTTC
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| DNA Sequence for Gene |
>N005_RS17595
ATGTCCCAAGAATTCGATTACATCATCATCGGTGCCGGCTCCGCCGGTAACACCCTGGCCACCCGCCTGACCGAAGACGAAGGCGTCACCGTTCTGCTGC TCGAAGCTGGCGGCCCGGACTATCGCCTCGACTTTCGCACGCAGATGCCCGCCGCCCTGGCGTTCCCGCTGCAAGGCCGACGCTACAACTGGGCCTACGA GACCGATCCCGAGCCACACATGAACGGCCGGCGCATGGAATGCGGTCGTGGCAAGGGCCTGGGCGGTTCTTCGCTGATCAACGGCATGTGCTACATCCGG GGCAACGCCCTGGACTACGACAACTGGGCAAAACTGCCCGGCCTCGAGGATTGGACCTACCTGGACTGCCTGCCCTATTTCAGGAAGGCCGAGACCCGGG ACATCGGCCCGAACGACTATCATGGCGGCGACGGCCCGGTCAGCGTGACAACGCCCAAGCCCGGCAACAACCCGCTGTTCCACGCCATGGTCGAGGCCGG CGTGCAGGCCGGTTACCCACGTACCGAGGACCTCAACGGTTACCAGCAGGAAGGTTTCGGCCCGATGGACCGAACCGTCACGCCGAATGGCCGACGCGCC AGCACCGCGCGCGGCTACCTGGATGTGGCCAAGAAGCGTTCGACCCTGACCATCGTCACCCATGCCCTGACCGACAAGATCCTGTTCGAAGGCAAGCGTG CCGTGGGCGTGCGTTACCTGGTGGGCGCCGCTGAAGAGCGCGTCGAAGCCAGGGCGCGCAAGGAGGTGCTGCTGTGCTCCGGCGCCATCGCCTCGCCGCA GATCCTGCAACGCTCCGGCGTCGGCCCGGCAAGATTGCTGGAAAGCCTCGACATCCCGGTGGTCCACGACCTGCCGGGCGTCGGTGAAAACCTCCAGGAT CACCTGGAGCTTTACCTGCAATACGCCTGCACCCAACCGGTCTCGTTGTACCCTTCGCTGCTCTGGTACAACCAGCCGGCCATCGGTGCCGAATGGCTGT TCAACGGCACCGGCATCGGTGCCAGCAACCAGTTCGAGGCCGGCGGTTTCATCCGCACCCGTCCGGAATTCGAATGGCCGAACATCCAGTATCACTTCCT GCCGGTGGCGATCAATTACAACGGCAGCAACGGTGTGAAGGAGCACGGTTTCCAGGCGCACATGGGTTCCATGCGCTCGCCGAGCCGGGGGCGGATCCAG GCGAAGTCCAAGGATCCTCGCCAGCACCCGAGCATCCTGTTCAACTACATGGCCACCGAGCAGGACTGGCAGGAATTCCGCGACGGCATCCGCCTGACCC GCGAGATCATGCAGCAGCCGGCGCTGGACCCGTTCCGTGGGCGCGAGATCAGCCCGGGTATCGAGGTGCAGACCGACGAGCAACTGGACCAGTTCATCCG CGAACACGCCGAGACCGCCTTCCACCCATCCTGCTCGTGCAAGATGGGCACCGACGACATGGCGGTGGTGGACGGCGAAGGCCGCGTGCATGGTCTGCAA GGCCTGCGGGTGGTGGATGCCTCGATCATGCCGATCATCACCACCGGCAACCTGAACGCGCCGACGATCATGATCGCCGAGAAAATCGCCGACAAGATCC GCGGCCGCAAGCCACTGCCACGCAGCACCGCGCCGTACTATGTGGCCGGCGATGCGCCGGTCAAGGGCAAGCCGGTGCGCGAGGTGGCGCCTGCCGCTCA GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACCGCAGCGTGGCTATCGCGAGCAGGCTCGCTCCCACAGGGATCTCCATGGACACAACTCTTGTGACCACTAAGGTCCAATGTGGGAGCGAGCCTGCTC GCGATGGCGGTAGCCCCTGACATTCAGTATTCCTCTCTACCTTGATCCCTCCCCCGCCCAGGCCTACTCTAGAGCCGCCGCGTCAATGCGCCGCACCTCG CTGCACCGCCACTCCAGACAAGGAGGTTTCATGTTCGACTTCCACCCCCAGCTCAAGCAGCGCTTTGCTGCCTTGCGCACGGGCGCTGAATTTTTTTCCC TGCGTTACGTGCGCGAATCCGGCCAGCATCTGTCGGTGCGCAAGAACATCGCCGAACCGCCCAGCCTGGGCCGTGACGAAGGAGCGATGCTCACCGTGCG GGTCAACGGTGTCGAAGCCTATGCGGCCACCAACGACCTGTCCCAGGCCGGCCTGCAAGCAGCGCTCGAACAAGCCGAGCAACGCGCCCGTCGGCTCAAG
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEFDYIIIGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPHMNGRRMECGRGKGLGGSSLINGMCYIR GNALDYDNWAKLPGLEDWTYLDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKPGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPNGRRA STARGYLDVAKKRSTLTIVTHALTDKILFEGKRAVGVRYLVGAAEERVEARARKEVLLCSGAIASPQILQRSGVGPARLLESLDIPVVHDLPGVGENLQD HLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPEFEWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRIQ AKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEVQTDEQLDQFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGLQ GLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRKPLPRSTAPYYVAGDAPVKGKPVREVAPAAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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