Pseudomonas mediterranea CFBP 5447, N005_RS16105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold34, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCCTGGTAGAAGATCGTCGAAAGCTTGGGGTCCTGGCTGCCCAGGGCCATGATCACCCGATGCAGGTTCACCGATTCTTCGCTGTTGACCAGCAGGT GGAAGCCACGGGCGATGTTCAACAGCACGCGTTCAATCGGCACGCCGTCCGGCCATTCGAAGAACAGCGGTGGCACCTGCTCTTCGCACTTGGCAATCAC CGCGGCGGAGAACAGCGTTTCCTTATCGTTGAAGTGGCTGTAGACCGTCAGCTTCGACACGCCCGCTTCGGTGGCGACGGTATCCATGCTGGTATTGGCG TAACCCAACTCTATGAACAGCCGTTTGGCAGCGTCGAGAATGGCCTGGCGCTTGACCAGATCCTTCGGACGGCCGGGGCCGCTGGAGGGTACAAGATTGT TCGACATTCTTCGCTTTAATACTGGACTGGTGAGTTTGCTATTAATAACATACCCGCCAGTATAATTATTCCAAGCACCATTAGCGAAAGGTCTGCCGCC
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| DNA Sequence for Gene |
>N005_RS16105
ATGTTCCGCTATGCATTGCCCCTCGCCCTGCCAGTCAGCCTGGCTTTTTTATTGTCTGCGTGTGGTCATGACGAACCGGTACCGGTCGCTGTGCGCCCCG CCATGGTCGTGAAGCCGGAGCCTTCGGTCCAGGCGACCGACAGTTACCCTGGAGAAGTGCGGGCCCGTTTCGAGCCGGACCTGGCTTTTCGCATTGGCGG CAAAGTGAGCCGACGACTGGTCGAAGAGGGGCAGCGGGTCAAGGCCAACCAACCCTTGGCCGAACTCGATCCCCAGGACGTGCGCTTGCAGCTGGAAGCG ACCCGGGCCCAGGTGGCGGCGGCCGAGGCCAACCTGAACCTGGTGCGTGCCGAGCGTGATCGCTACAAGACACTGCTGGACCGGCAGATGGTCAGCCGTT CCCAGTACGACAATGCCGAGAACCTCTACCGCTCCGGTGCCGCGCGCCTCAAGCAGATCCAGGCGGAGTTCGACGTCTCCAGCAACCAGGCCAGTTATTC GGTATTGCGGGCGCCCCAGGATGGCGTGGTCGCCCGGCGTTCGGTGGAAGTCGGTCAGGTGGTGCAAGCCGGGCAGACCGTCTTCACCCTCGCCACCGAC GGCGAGCGGGAAGTGCTGATCAGCCTGCCGGAACAGAGCTTCGGTCGGTTCAAGATCGGCCAACCGGTCTCGGTGGAACTGTGGAGCCAGCCGGGCCAGC GCTTCAATGGGCATATCCGCGAACTCTCGCCGGCCGCCGATCCCAAGTCCCGCACCTTCGCCGCCCGTGTCGCATTCGCCGGAGGCAGCGTTCCGGCCGA ATTGGGCCAGAGCGCCCGGGTGTTTATCCAGACGGTCGACAAGGTGCCGTTGTCGGTGCCGCTGTCGGCCCTGACGGCTGAAAACGGCGCGACGTATGTC TGGGTGGTCAACGCCAACAGCACCTTGAAGAAAGTCCCGGTGCGGGTCGGCGCCTTCGGTGAAAAGACCGTTCCGGTGCTTGAGGGCCTCAGTGCCAATG ACTGGGTGGTGGCAGCCGGCGTGCATGTGCTCCTCGACGGCCAGCAGGTACGGCCGGTGGATCGCTCCAACCGCGTGGTCAACCTGGCGGCCAAGGAGTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCCGATGGGCTTCAATCTTTCCGAATGGGCGTTGCGTAATCGCCAGATCGTACTGTTCCTGATGCTGTTGCTGGCGATCGTCGGCGCGCTTTCCTACA CCAAGTTGGGTCAGAGCGAAGACCCGCCGTTCACCTTCAAGGCCATGGTCATCAGTACCAATTGGCCGGGGGCCACGGCTGAAGAGGTGTCGCGCCAGGT CACCGAACGCATCGAAAAGAAACTGATGGAGACCGGCGACTACGAGAAAATCGTTTCGTTTTCTCGTCCGGGCGAGTCCCAGGTGACTTTCATGGCCCGG GACTCCATGCATTCGGCGCAGATCCCCGAGCTGTGGTACCAGATCCGCAAGAAGATCAACGACATCCGCCACACCTTGCCCCAGGGTGTCCAGGGGCCTT TCTTCAACGATGAATTCGGTACCACCTTCGGCAACATCTACGCCCTGACCGGCGATGGGTTTGACTACGGGGTGCTCAAGGATTACGCCGACCGCGTCCA
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| Amino Acid Sequence |
>RND transporter
MFRYALPLALPVSLAFLLSACGHDEPVPVAVRPAMVVKPEPSVQATDSYPGEVRARFEPDLAFRIGGKVSRRLVEEGQRVKANQPLAELDPQDVRLQLEA TRAQVAAAEANLNLVRAERDRYKTLLDRQMVSRSQYDNAENLYRSGAARLKQIQAEFDVSSNQASYSVLRAPQDGVVARRSVEVGQVVQAGQTVFTLATD GEREVLISLPEQSFGRFKIGQPVSVELWSQPGQRFNGHIRELSPAADPKSRTFAARVAFAGGSVPAELGQSARVFIQTVDKVPLSVPLSALTAENGATYV WVVNANSTLKKVPVRVGAFGEKTVPVLEGLSANDWVVAAGVHVLLDGQQVRPVDRSNRVVNLAAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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