Pseudomonas mediterranea CFBP 5447, N005_RS13850
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold34, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACATCCACCCATTACCCAGCCCAATCCAGATCACTCAATGGGATATCAGCCAAGCAAGGGTCATGTATTTCCTGTACGATGCCTGGCCCAATTAATTAT CGACAGGTTAATGGCCGCCATGCGTGTAAAAGCATCCAACAGCAAAGCAAAGCCAGCTCCAGCCGTTGAAACCAGCGAATCGATCAACGACCAGATCGCT GCGTTCCTCAAATCCGGCGGTGAAATCCAGCAAATCGCCAAAGGCGTCAGCGGCCAGACATTCGGCCCATCCAAGCAGATCAGCCTGGGCAAGAAGTAAT CCCCGCATCACCTGGTCCCAAAGCGCTTTGAGCTTCGAAGCGCTTGGACTGGAACCTCCCCCGCCACATCTCACCGGTAAAAATCGACGAACGGCCTTCA TCGCCGGGTATTCGCCGGTATGCTTGCACCTCTCTAGCTCAAGCGTTCTAGCTCAAGTGTTCCAGCTTGTCCTGCTCCTCGCTAATTCACGGAGTGAAGC
|
|
| DNA Sequence for Gene |
>N005_RS13850
ATGCGTATCCCCATTGCCCTGCTGACCATCAGCCTGCTGGCCTGTCCCCCAGCCCACGGACAGATCTTCCAGCGCGAACTCGGCGACTTCGACCTCAAGC TCGGCACCAGCCCCAGCCGCAGCATGGCCCAAGGCCTCGTCACGCCTTCGAGCACCGGCTCGTTTCACGGTGGCCTGGACCTGAGCCACGACAGCGGCTG GTACTTTGGACAATGGTCACCCAGCGCCGGGCTGACCTCCTCCGCCGACCTCGAAGTGGATTCCTACATGGGGTTCAAGCATCCCTTCGACCAGACCCTG GGTTACGAAGTCGGCCTGATCCACTACAGCTACCCCACCGTCGACACCCTCGACAGCCAGGAACTCTATGGTGGCCTGACCGTGCTCGGCAGCCGTTTCG GCGCTGCCCTGAGCAATGACCCGGACAAACAGAACAGCACGCTGTTCGCCGACCTGGGCGGTAACGTGCCGTTCGGCATCGGCATCAGCGCCAAATACAC CACCCATCAGCTCAATACGCCGGTTTCAGTCGAGAACGGCTATGTAGGCAGCTTCAGCGACTGGTCGTTGAAAATTTCCCGCCCGTGGCGCGGCATCGAC CTGAACCTGATCTACAGCGACTCCAGCCTCAGCGGCAGCAGCTGTTCGGCCTACTCCGGCCACAACAGCGAATGCGACGGCCTGCTGACCCTGAAGATGG CCCATCCGTTTTACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGGTTACGTATTCACTCGGCTGAACTGCCGCGCGCCTGCCATGCTCAAACAAAACACCGATGGCTTCGCAAGGACTCGCTCATGTCGCGCTGGTTTACAC GCACCGTCACCTTTATCGCCCTGCTGCTGTTGCTGACGGCCTGCAGCCGCATCGGCCTGGCCTACCGCAACCTCGACCTGATCATCCCCTGGACCCTCAA CGACTACCTGGAAATCAACGGCGAGCAAAAGGACTGGTTCAACGAACGCCTCAAGGAGCACCTGAGCTGGCACTGCACCACGCAACTGCCCGGTTACCTC GATTGGCTGGACCGCTTGAAGATCATGGTCCAGAACGATCAGGTGACTGACGAAGCCCTGCAACAGCGCACCCGGGAAGCCAAGGCCGCCATCGCCGAAA CCGCTCGGGAAATCACGCCGTCAGCCATCGAATTGCTGCAAGGCCTGAACGATGAACAGGTCGCTGACATGGACGCCGCGTTCATCAAGGACCAGCGCAA
|
|
| Amino Acid Sequence |
>lipoprotein
MRIPIALLTISLLACPPAHGQIFQRELGDFDLKLGTSPSRSMAQGLVTPSSTGSFHGGLDLSHDSGWYFGQWSPSAGLTSSADLEVDSYMGFKHPFDQTL GYEVGLIHYSYPTVDTLDSQELYGGLTVLGSRFGAALSNDPDKQNSTLFADLGGNVPFGIGISAKYTTHQLNTPVSVENGYVGSFSDWSLKISRPWRGID LNLIYSDSSLSGSSCSAYSGHNSECDGLLTLKMAHPFY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|