Pseudomonas mediterranea CFBP 5447, N005_RS13460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold34, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAAACCGCGTTCCAGATCGGCTTCATGATCTTCATTCCGTTTCTGATTATCGACCTGGTGGTCGCCAGTATATTGATGGCGATGGGGATGATGATGTTG TCGCCGCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTCGTGCTGGTGGATGGCTGGGCGTTGATCATCGGTACCCTGGCGGGCAGTTTCGGCGGTG TTTAGATTATTTGCAGGTAGGGCGATATGACACCTGAAGTAGCGGTAGACCTGTTCCGCGAAGCGCTCTGGCTGACGACCGTGATGGTCGCCATCCTGGT GATCCCCAGTCTGTTGGTGGGCCTGGTTGTGGCGATGTTCCAGGCTGCGACCCAGATCAACGAACAGACCCTGAGCTTCCTGCCGCGCCTGCTGGTCATG CTGGTGACGCTGATCGTTGCCGGGCCCTGGATGGTGCAAACCTTCATGGAATACATCCTGCGGCTGTATGGCAGTATTCCGCAGTTGATCGGCTGACCGG
|
|
| DNA Sequence for Gene |
>N005_RS13460
ATGTCGATGCTCGCGCTGACGGATACCCAGATCGGCTCCTGGGTGGCGGCTTTCGTCTTGCCGCTGTTTCGCGTCACTGCCGTGTTGATGAGCATGCCGG TCTTCGGTACGACTCTGCTGCCGAGGCGCGTGCGCCTGTATTTCGCCCTGGCAATCACGGTGGTGATCGTGCCTGGGTTGCCGCCGATGCCAGAGGTTCA TGCGCTGGACCTCAGTGCGCTGATGCTGGTGGCCGAACAGATTCTTATCGGGTCCTTGATGGGATTTTCGCTGCAGCTGTTTTTCCAGGCGTTCGTGGTG GCCGGGCAAATCATTTCGATCCAGATGGGCATGGCGTTCGCGTCCATGATCGACCCTACGAACGGCGTGAATACGGCGGTGATCGGTCAGTTCCTGACGA TGCTGGTGACGCTGCTGTTCCTCGCCATGAACGGACACCTGGTGGTCTTCGAGGTGTTGACCGAGAGCTTCACCACGATGCCGGTAGGCAGTGCGCTGCT GGTCAATCATTTCTGGGAGGTTGCCGGCAAGCTCGGCTGGGTCCTGGGGGCAGCGATGGTATTGGTGCTGCCTGCGATCACGGCCCTGCTGGTGGTCAAC ATTGCATTTGGGGTGATGACCCGGGCAGCGCCGCAACTGAACATTTTTTCCATCGGCTTTCCGCTGACCCTGGTGCTGGGCATGGTGATCTTCTGGGTCA GCCTGGGGGATATTCTCAATCAGTATCAGCCGCTGGCCACCCAGGCTTTGCAGCTGCTCCGTGACATGGCACAGGCGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATCATGGCTGAGAGCGAGAGTGGCCAGGACAAGACAGAAGACCCCACGGAGAAGCGTAAGCGCGAGTCCCGGGAGAAGGGTGAGATCGCGCGCTCCAAGG AGCTCAATACCCTTGTGGTAATGCTGGCCGGTACTGGCGGGCTGCTGATCTATGGGGGTGGGTTGGCCCTGGATCTGCTGGAAATCATGCGCTTGAATTT CTCCCTGCCTCGTGAGGTGCTGCTCAGCCCGGGGACTATGGCGCAGCACCTGTTGCACTCGGGCAAGATTGCGATTGTGGCGGTGCAGCCGATTCTGATC TTCTTGCTCCTGGCTGCTTTCATCGGCCCGATTTCCCTGGGGGGATGGCTGTTCGCAGCCGGTAGCCTGGCCCCCAAGTTCAGTCGGATGAATCCGTTGG CAGGCCTGAAACGCATGTTTTCCACCTCGGCCCTGATGGAACTGCTCAAGGCCTTTGGGAAATTTCTGCTGGTCTTGTCCGTGGCTTTGACGGTGTTGCA
|
|
| Amino Acid Sequence |
>flagellar biosynthesis protein FliR
MSMLALTDTQIGSWVAAFVLPLFRVTAVLMSMPVFGTTLLPRRVRLYFALAITVVIVPGLPPMPEVHALDLSALMLVAEQILIGSLMGFSLQLFFQAFVV AGQIISIQMGMAFASMIDPTNGVNTAVIGQFLTMLVTLLFLAMNGHLVVFEVLTESFTTMPVGSALLVNHFWEVAGKLGWVLGAAMVLVLPAITALLVVN IAFGVMTRAAPQLNIFSIGFPLTLVLGMVIFWVSLGDILNQYQPLATQALQLLRDMAQAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|