Pseudomonas mediterranea CFBP 5447, N005_RS12585
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold34, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCTGCTGTTCTGGCTGGTGGCGACGATGGCGCTGACGATCTATGAACAAGGCACCCGGTTGCCGGACATCGACCTGCGCGACGCCAGCGGACAGACCG TGAAACTCACCGATTATCAGGGCGGCCCCCTGGTGGTCAATCTCTGGGCCACCTGGTGCCCGCCCTGCCGGCGAGAAATGCCGGTACTGGAAGAAGCCCA GCAGCAGCGTCCGGACCTGACCTTCCTCTTCGTCAACCAGGCCGAAAGCATGCAGAGCGTCAGCACCTACCTCGCCACCCAGGGCCTGAGCCTGGACAAT GTCTTGTTCGACGGCAGTGGTCGCCTTGGCCAGGCCGTAGGCTCCATGGCGCTGCCAACAACATTGTTCTACAGCGCCGACGGCCGCCTGCTGGGCAGTC ACCTGGGTGAACTGTCGGAAGCCAGCCTGGCCCGCGCCCTGGAAAATTTCGAAACGCCGGGTTCAACCACGGCGCCCCACCCCGCCACAAGGAAACCGCC
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| DNA Sequence for Gene |
>N005_RS12585
ATGCCCCGCCTCCGCCACCTGCTGACGCTGGCCGTCGCCACGGCGCTGTTGCAAGCGCCGCTGCTACAAGCCGAAGAACTGCCGGCAGCCATCAAGAAAA TCGAAGCCAAGGGCGCGAAGATCGTCGGCACCTTCGAGGCACCGGACGGGCTGCGCGGTTACGCGGCGCAATACCAGAACCGCGGCATGGCGCTGTACCT GACCCCGGACGGCCAGCACGTCCTGCTCGGCAACCTGTACGACGCCGACGGCAAGGACTTGAGCGCCGAGCCGCTGCAGAAACTGGTCTACGCACCGATG GCGAAGGAAATATGGGCAAAAATGGAGGCGAGCAACTGGATCGCCGACGGCAGCAAGGACGCACCGCGTATCGTGTACCTGTTCAGCGACCCCAATTGCC CGTACTGCAACATGTTCTGGGAGCAGGCCCGGCCGTGGGTCAAGGCCGGCAAGGTGCAGTTGCGCCACATCATGGTGGGCATCATCCGCGAAGACAGCCC CGGGAAATCCGCCGCGTTGCTGGCGGCCAAGGACCCGCAAAAAGCCCTGGAGGACCATGAAAAATCCGGCAAGGGCAGCACGCTCAAACCCCTCAAGGAC ATACCGCCCGCCGTCCAGGCCAAGCTCGACGCCAACCAGCAGTTGATGGACGAACTGGAGCTGTCCGCCACCCCGGCGATTTTCTACCTGGATGACAAAG GCGAGCTGCAACAGCAACAAGGCGCCCCATCGCCGGACAAACTGGTGAAGATTCTCGGGCCGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGTAGATCGGGCTGGCCTCTTCGCGAGCAAGCTCGCTCCCACATTGACCTGCCAACACCGGGCCATTGTGGGAGCGAGCCTGCTCGCGATTGCAGAGGGT CAGCTACGCAGAAACTCCAGCAACGCCTCGGTTACAAACCCAGGATTCTCCAGGTTGGAAATGTGCCCCGCCTCCGGGATCAGCACATGGGGACAACCGA TCAACCCGGCCATCTCCAGAGACTCGGAAGGTGGCCGTGGCTTGTCCTGGTCACCGCACATCACCCAGGTGCCGCCGGCATCCAGTTCACCCAGGCGCGG CAGGATATCGTCGCGGCCGAAAATGATTCGCCCCAACGGCACGATGCTGTCACGCAGGCGGTCAGCCGGCAGCGCGGCCAGTGTCGCGCGAAATTGCCGG TACAGCGGCGACTGCGGATCGATGCCTGGCCGGAAGAAGATCGGTACGACAATGTCCAGCAACGGCTCGGGAATGCTGCCGCCGGCTTCGATCTTGTCGA
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| Amino Acid Sequence |
>dihydroneopterin aldolase
MPRLRHLLTLAVATALLQAPLLQAEELPAAIKKIEAKGAKIVGTFEAPDGLRGYAAQYQNRGMALYLTPDGQHVLLGNLYDADGKDLSAEPLQKLVYAPM AKEIWAKMEASNWIADGSKDAPRIVYLFSDPNCPYCNMFWEQARPWVKAGKVQLRHIMVGIIREDSPGKSAALLAAKDPQKALEDHEKSGKGSTLKPLKD IPPAVQAKLDANQQLMDELELSATPAIFYLDDKGELQQQQGAPSPDKLVKILGPK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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