Pseudomonas mediterranea CFBP 5447, N005_RS11540

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas mediterranea CFBP 5447 scaffold33, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCTGGAAGTGTCGGCCAAACGGGTCATGGACCTGGTCGAAAGCCAGCGAGCCAGCGGAATAGACGCTTCGCGGATTTTCCTGGCCGGCTTTTCCCAAGGC GGCGCGGTGGTCTATCACACGGCGTTCGTGAAGTGGCAGGGGCCGTTGGGCGGTGTGATCGCCCTGTCGACCTATGCGCCGACATTCGGTGACGAACTGC AATTATCCGCCAGCCAGCAGCGCATTCCGGTCCTGGCGCTGCATGGGCAATACGACGAAGTGGTGCTCAACCCCATGGGCCGGACCGCAAAGGAATATTT GAAGCAGCATGGTGTCACCGTGACATGGCAGGAATACCCAATGGGCCACGAAGTGTTACCCGAGGAGATTCGCGACATCGGTACCTGGCTGGCCGAACGG TTGCGCTGAATCGCCACGCCAAGCCTTTGACGAACACACTACGCCGCGCCCGTTTCTTGCATTACACTGGCCGGCGTACATTCCTTAACCAATCGATGAG
DNA Sequence for Gene
>N005_RS11540
ATGACCGTGCTCAAAGCACTCAAGAAGATGTTCGGTAAGAGCGAGGCCGAGCAGCTCGCGCCCGGCCCCAGTGCCCCTGTCCAAGGCCCGAGCCGTACCG AAGCGCCACAACCATCGCGCCACCCTGCCCCTGTTGCGCAGAAGAAAAAAGAGCCGGCGACCTCCCCCGCCACCGCTCCTGCGCCGGACAAGCCGCGCAA TGAAAACCCCAAGCCGCGCCGCGAACGAGCACCGAAACCGCCGGTCGTCGCCTGGAAGCTCGAAGACTTCGTCGTAGAGCCCCAGGAAGGCAAGACCCGC TTCCACGATTTCAAGCTGGCCCCGGAACTGATGCATGCCATCCAGGACCTGGGGTTCCCGTATTGCACGCCGATCCAGGCCCAGGTGCTCGGGTATACCC TCGCCGGCAAGGACGCTATCGGTCGCGCCCAGACCGGCACCGGCAAGACCGCCGCGTTCCTGATTTCCACCATCACCCAGCTGCTGCAGACCCCGCCACC CAAAGAGCGCTACATGGGCGAGCCGAGGGCACTGATCATCGCGCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCGCCGACCTGACCAAATAC ACCGGCCTGAACGTCATGACGTTCGTCGGTGGCATGGACTTCGACAAGCAGCTCAAGCACCTCGAAGCCCGTCATTGCGACATCCTGGTGGCCACGCCCG GTCGCCTGCTGGACTTCAACCAGCGTGGCGACGTGCACCTGGACATGGTCGAGGTCATGGTGCTGGACGAGGCCGACCGCATGCTCGACATGGGCTTCAT CCCGCAAGTGCGCCAGATCATTCGCCAGACCCCGCCGAAAAGCGAACGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGAAGACGTGATGAACCTGGCC CGGCAATGGACCACCGACCCGGCCATCGTCGAGATTGAAGCCGAGAACGTCGCCAGCGAAAACGTCGAACAACATATCTACGCCGTAGCCGGTGCCGACA AGTACAAGCTGCTCTACAACCTGGTCAATGACAACGGTTGGGAACGGGTCATGGTGTTCGCCAACCGCAAGGACGAAGTGCGGCGTATCGAAGAACGCCT GGTGCGCGACGGCGTCAACGCGGCCCAGCTGTCAGGCGATGTGCCCCAGCACAAGCGCATCAAGACGCTCGAGGGCTTTCGCGAAGGCAAAATCCGTGTG CTGGTGGCAACCGACGTGGCCGGCCGCGGCATCCACATCGACGGCATCAGCCATGTGATCAACTTCACCCTGCCGGAAGTACCGGACGACTACGTGCACC GCATCGGCCGTACCGGTCGCGCCGGCGCCGAGGGCGTGTCCATCAGCTTCGCCGGCGAGGACGACTCCTATCAGTTGCCCTCCATCGAAGCGCTGCTGGG TCGCAAGATCAGTTGCGAAATGCCGCCGACCCATCTGCTCCGGCCGGTCGAGCGCAAACGTCACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCGTCGCCTCACCACCCGAAAGCGCAGCCCTCGAAGGCTGCGCTTTTTTTTGGCCCGGGATATTGCTCGAATAAACTAAAAGTCCATAATGGACAAATTA GTTTACACAGAGCAATCCGGAGTTCCGATGCCCAGCACACCTTATGTCATGACCCAAGCCCAGGCTCGCGCACTGCTCGGGCAAATCGATGTGCCGCACA TCCTGCGCAAACTGTTTCGCGACCTTGCAGCCGGGCAGGCGGTGCAACCGGCCCAGCAATGGGTGGAATTTCCCCAGGGCGCCGGGGACTTCATCAACTA CCTGGGCGTGTTGGCCGAGGATCAGGTGTATGGCGTCAAGACGTCGCCCTACATCGTGCGCGAGCAGGGTCCGCTGGTCACCGCCTGGACCTTGCTGATG TCGATGCGCACTGGCCAACCGCTGCTGTTGTGCGACGCCAGCGAACTGACGACCGCCCGCACCGCTGCCACCACGGCCGTCGCCGTCGATGCCCTCGCCC
Amino Acid Sequence
>ATP-dependent RNA helicase RhlB
MTVLKALKKMFGKSEAEQLAPGPSAPVQGPSRTEAPQPSRHPAPVAQKKKEPATSPATAPAPDKPRNENPKPRRERAPKPPVVAWKLEDFVVEPQEGKTR FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISTITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKY TGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLA RQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAEGVSISFAGEDDSYQLPSIEALLGRKISCEMPPTHLLRPVERKRH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site