Pseudomonas mediterranea CFBP 5447, N005_RS11230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold33, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTTGGCTTCCTGTAGCTGAGGTATCTATCTACGGTAGCCATGCCTTCGTTGCACCGAGGCGCTGATACTCGAACGACGTTTCCCAGAACGACGTAGTAC TTGTGGCGAGGGAGCTTGCTCCCGCTAAGACGGGTTGACGCGTCGGTGGGTTGCGGCTGCTGCGCAGCCGAGCGGGAGCAAGCTCCCTCGCCACAGGGGT ATTCCAGGGCTGGACATAAGGTTCTCCCCTCGTTTACACGTTCCATCCCCTTGTAATCCCAGTCAATGCATCTCCAAAAAGCCCATTTTTGCTATGGCTT ATCCCTGAATTTCCAAGGTTTTACAGTGAAACTCTCTGTCCCCGGCTTTTTATACTGCACGGCCCCATCGGTCTTGGCGTCTGGTTTACGGGACGGTCTG TCCATGAGGCAGGCCAGGTTTCGGCAGGGTGGCAGGCTTATTGGCCTGTGGCCTTGGAAACCCGGTGGCTAATCCAATAACAAAACGGAGTTGTATCCCT
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| DNA Sequence for Gene |
>N005_RS11230
ATGCCTGTCGGCAATCATCTGCCCCCTGGCGAGACCGCTCAGGGCGGTCCGCTCAAACGTGAGCTCGGCGAGCGGCATATCCGCCTGATGGCGCTTGGTG CCTGCATCGGGGTCGGGCTGTTCCTCGGTTCGGCCAAGGCCATTGAAATGGCCGGTCCGGCGATCATGCTGTCCTACATCATCGGTGGCCTGGCGATCCT GGTGATCATGCGCGCCCTCGGCGAGATGGCCGTGCACAATCCGGTGGCTGGTTCGTTCAGCCGATATGCCCAGGACTACCTCGGCCCGCTGGCGGGTTTC CTGACCGGCTGGAACTACTGGTTCCTGTGGCTGGTGACCTGCGTGGCGGAAATCACCGCGGTGGCGGTGTACATGGGCATCTGGTTCCCCGACGTGCCCC GCTGGATCTGGGCCCTGGCCGCACTGGTCAGCATGGGTTCGATCAACCTGATCGCGGTCAAGGCCTTCGGCGAGTTCGAATTCTGGTTCGCCCTGATCAA GATCGTGACCATCATCGCCATGGTCATCGGCGGCGTAGGCATCATCGCTTTCGGGTTCGGCAACGACGGCGTGGCCCTGGGCATTTCCAACCTCTGGACC CACGGTGGGTTCATGCCCAATGGGGTGCAGGGTGTCTTGATGTCCCTGCAGATGGTGATGTTCGCCTACCTGGGTGTGGAGATGATCGGCCTGACCGCCG GTGAGGCGAAGAACCCGCAGAAAACCATCCCCAACGCCATTGGTTCGGTGTTCTGGCGGATCCTGTTGTTCTATGTCGGCGCGTTGTTCGTGATCCTGTC GATCTACCCCTGGAACGAGATCGGCACCCAGGGCAGCCCGTTCGTAATGACGTTCGAGCGCCTGGGCATCAAGACGGCTGCGGGAATCATCAACTTCGTG GTCATCACCGCTGCGTTGTCGTCCTGTAACGGCGGCATCTTCAGCACCGGGCGGATGCTCTACAGCCTGGCGCAGAATGGCCAGGCCCCGGCCGGCTTCG CCACCACCTCGACCAACGGCGTGCCACGCCGCGCGTTGCTGTTGTCCATTGCCGCATTGCTGCTGGGTGTGCTGCTCAATTACCTGGTACCGGAAAAAGT CTTCGTCTGGGTGACCTCCATCGCCACCTTCGGGGCGATCTGGACCTGGGTGATGATCCTGCTGGCCCAGCTCAAGTTCCGCAAAGGCCTGAGCGCTTCC GAGCGTGCCGCCCTGAAATACCGCATGTGGCTGTATCCGGTCAGCTCATACCTGGCACTGGCCTTCCTGGTGCTGGTGGTGGGACTGATGGCGTACTTCC CGGATACACGGGTGGCGTTGTACGTGGGGCCGGCGTTTCTGGTGCTGCTGACGGTGTTGTTCTACACCTTCAAGTTGCAGCCGACGGGTGAGGCGCAAGG TTCGATGAGTTCGGTTCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGATAGGTCCGGCGAGGTTATTGTCAGGCTTGACGGTAGCCTCGCTCGACTCCGAATGATCGAGCGCTAACGCAATGTCGTCTCTCGCAGCCACCGTG GAATGGCCGAGCGCTGTTCGTTCAGGCGTGCCCCTGACGTCACTTCGAAACTGGCCTGGTTATCAGTGGCGGAGCTACCTCCGACATAGACCGTGAATAT CCCGGTCTCGACAACCGGCAGACAATCGATATCGAGCGACGCGAAGTCGTCCTGATCGAGCGTGAATCCTACGGTTTTTGTTTCCCCCGCAGCGAGATTG ACCTTGAAGAAACCACGTAGCGTGCGGACGGGCCGTGTCACGCTCGCGACATTCTGGCGCAAGTACAACTGCACCGTTTCGTCACCACTTCGTTGACCGC TGTTGCGAACGTTCACCTGTACGTTCAGCGTTTCATTGAAGGCCAACCGCTGTTTACTGAGGACCGGGGTTTCATAGGTGAACGTGGTGTAGCTCAGGCC
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| Amino Acid Sequence |
>D-alanine/D-serine/glycine permease
MPVGNHLPPGETAQGGPLKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYIIGGLAILVIMRALGEMAVHNPVAGSFSRYAQDYLGPLAGF LTGWNYWFLWLVTCVAEITAVAVYMGIWFPDVPRWIWALAALVSMGSINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGVALGISNLWT HGGFMPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFV VITAALSSCNGGIFSTGRMLYSLAQNGQAPAGFATTSTNGVPRRALLLSIAALLLGVLLNYLVPEKVFVWVTSIATFGAIWTWVMILLAQLKFRKGLSAS ERAALKYRMWLYPVSSYLALAFLVLVVGLMAYFPDTRVALYVGPAFLVLLTVLFYTFKLQPTGEAQGSMSSVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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