Pseudomonas mediterranea CFBP 5447, N005_RS10115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold33, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACAATTTCGATGCCTGGGTGCAGGCGGCTGAAACTCTGCAACAGCGGTGGCAGCAGGTTGGCGAATACGGAAGGAAAACTGGCAAGTTTGATTCGGCC CAAATGGCAGCCGCGTGATGCATCCACCAGGTTTTGGATCGATTCGAATTCGCTGAGCATACGACGTGCGCGATCGATGATCTGTTGCCCGATGGCAGTC GCGGTAGTCTGGCGGCGGTCGCGCACGAACACTTTCACCCCCAGCGCTTCCTCCATCTGCGTCAGGGCTTGGCTGGCGCCTGACTGGGTAATGCCATAAC GCTCGGCGGCACGGGAAACATTTTCGGCGTCGGCCACGGCGACCAGCAGGCGCCAATGCATCAGGTTCATCATTTCAGTAGTTCCTCTTATGTTTGGCGA GTAGAGATTTAATTTTACGAAGTGCCTGCACTGCCTCAGGATCGCCCCTGATTACACAGTGAGGTGTTGGAAAGTGGGCAAAACCCTATCAAAGGATCTG
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| DNA Sequence for Gene |
>N005_RS10115
ATGGCCGGCCCCGTCTCGGCGGTTCCAGTTCTGGTGAGTGTGGCCTTGAGTTCGTTCATGGTCGCGCTGGATGTCACTGCGCTGAACGTAGCGCTGCCGA GCATCGGGCATGATCTGGCGGCGGGCATGGATCGGCTGCAATGGATCGCCGGTGCCTACACCCTGGTGTTTGCCAGCCTGTTGTTGTCCGCCGGCGCATT GAGTGATCGGCTGGGGGCCAGAAAAGTGTTTCTGTTTGCCCTATGGGTCTTTATCAGTGCTTCGGTGGCTTGCGGCTTGGCCCAGGGCGTTGTCGAGCTG ATTACCGCGCGGGCCATTCAAGGTATCGGTGCGGCGCTGATGCTGCCCAGCTCCATGGCTTTGCTGGTCGAGGCGTATCCCGACCCCAAGGCGCGGGCCA AGGCTGTGGCTTTGTGGGGTGGGATCTCGGCACTCGCACTGGTGAGCGGACCGTTATTGGGCGGCATGCTGGTGGAGATGGTCGATTGGCGCTCGATTTT TTATCTGAACGTACCGTTCTGTCTGATCGCCTTGGGCTGTTGCGCGGCCCGTAACAGTCGCCTTGCCATCCAGCCGCGCTCGATTGACTGGGCGGGGCAG CTGTTTTCGACGCTGGCGCTGTTGTCGTTGATCTTCGCCCTGATTGAAGGGCCGGTTTGGGGCTGGAGCAATGCTTGGGTCATCATGATGTTGCTGGTGG CGCTGGTTTCGGGCACGGCGTTCATTTATTCGCAGCAGACGCAGCATGAGCCGATGCTGCCGCTGAGTCTGTTCGAGTCCAGAACCTTTTCTGCCGCCAT CGGTGCCGGGTTCCTGCAAACCCTGGCGTACTACGGCAGTCTGTTCGTGTTGCCATTCGCCCTGCAGGGACAGGGACGGACGCCAGTGGAGATCGGTCTC GCAATGATTCCAATGACGATTGCGACCGGTGTGATGGCGAGTCTCTCGGGACGTTTGTCCAATGCCTTCGGTGCCCGTTCGGTCGGTGCCGCCGGCATGC TTTGTGGCGCGCTTGGCGCGGCATTGCTGGTGCTGTACGGAATGGATCGCATCAGCCTGGTATTCGGCGGGCTCTTGATCGGTCTGGGTGGTGCGACCTT GCCGGTCATCGTTGGAGCTTGCCTGGCGAGTGTGCCGAGCGGCAAGGTCGGCGTCGGATCCGGGGTACTCAATGCCGCGCGTCAATGTGGCGGGGTGGTC GGTATTGCCTTGCTCGGTGCTTCGCTCGAAGGACCGGGGCGCGCCACCGCTGCCTTGTCGATCATTGCCCTGTCGTTTCTTGCTGCCGCTTTGCTGACCG TGCTGCGGCTGTACACCGACGCAGTCGATGTAGTGAGTGAATGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGCGCGTCGAAGCTGGCCGGTGAGTGTTTCAATGGGTGAAGGGTCGTGTGGCCTGCCCTACGGACAGGCAGGCGACGCAACGTTGTTGTCAGGTGGGT CCAGATTGTGAAAGAGCGATTCGGCAAGGCGCCGAAGCGCGCTTGTCGAGGATGTTGCCTACGGTGACGCTCAACCCCAGCGACGTACCGTCCCGGTGTC CAGTCCCAGCAGATCGAGCATTCGGCCAACCGTATGGTCGACCATTTCTTCGATCGATCGCGGCCGGGCATAAAACGCAGGTACTGGCGGCATCACGATG CCGCCCATCTCACAGACCTGGGTCATGCTGCGCAGGTGTCCCAGATGCAACGGTGTTTCGCGCACCATCAGAATCAATGGCCGGCGTTCCTTGAGCGTCA CATCGGCGGCGCGGCTGAGTAGGCTGCCGGTGATTCCGCTGGAAATCTCCGAGAGACTCTTGATCGAGCAGGGGGTCACTACCATGCCCAAGGTCTTGAA
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| Amino Acid Sequence |
>hypothetical protein
MAGPVSAVPVLVSVALSSFMVALDVTALNVALPSIGHDLAAGMDRLQWIAGAYTLVFASLLLSAGALSDRLGARKVFLFALWVFISASVACGLAQGVVEL ITARAIQGIGAALMLPSSMALLVEAYPDPKARAKAVALWGGISALALVSGPLLGGMLVEMVDWRSIFYLNVPFCLIALGCCAARNSRLAIQPRSIDWAGQ LFSTLALLSLIFALIEGPVWGWSNAWVIMMLLVALVSGTAFIYSQQTQHEPMLPLSLFESRTFSAAIGAGFLQTLAYYGSLFVLPFALQGQGRTPVEIGL AMIPMTIATGVMASLSGRLSNAFGARSVGAAGMLCGALGAALLVLYGMDRISLVFGGLLIGLGGATLPVIVGACLASVPSGKVGVGSGVLNAARQCGGVV GIALLGASLEGPGRATAALSIIALSFLAAALLTVLRLYTDAVDVVSEC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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