Pseudomonas mediterranea CFBP 5447, N005_RS08260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCGACACCGCGCCGTTTGCCTGGTTACAGTCCGCCGGCCTGAAGCTGTTCGCACTGGCCGAAGATGTCCAGGCCCGAGGCTTGCAAGCACCCGACTGG GCCAAGGCCATCGACTACCCGGCCTTCGTCGAACTGTCGATCCAGCATGACAAGGTCAACACCTGGCTATGAATGCGCTGAACGTGGGCGAACGCGCCAT CGCGCTGGACAAGGACGGCTACCTGGCCGACCGGGACGACTGGTCAGTCGAGGTAGCCACGGCCCTGGCCGCCGCCGAAGATATCGAGTTGAGCCCCGAG CACTGGGAAATCCTCGAACTGCTGCGGGGCTTCTACGACGAGTTCCAGCTCTCCCCCGCCACCCGGCCGCTGATCAAATACACCGCGCTGAAACTGGGCG CGGACAAGGGCAACAGCCTGCACCTGAACCGACTGTTCAAAGGCACTCCCGCCAAACTCGCCGCCAAGCTGGCGGGCCTGCCCAAACCGACGAATTGCTT
|
|
| DNA Sequence for Gene |
>N005_RS08260
ATGACCGACGTTCCATCGCTGACTCTCGAAACCCCGGCCGAACATCCATTCGCCCAGTTCGTGCGCATCCTGGGCAAAGGCAAGCGCGGTGCCCGTGATC TGACCCGGGAAGAAGCCCGCGAAGCCATGGGCATGGTGCTCGACGAACAGGTCGAGGATACCCAGCTTGGCGCCTTCCTGATGCTGTTGCGGCACAAGGA AGAAAGCGCCGAGGAAATGGCCGGCTTCACCGAAGCCCTGCGCGCACGCCTGGATGCCCCGGCGTTGGCGGTGGACCTCGACTGGCCGACCTACGCCGGC AAGAAGCGTCATCTGCCCTGGTACCTGCTGGCGGCCAAGTGCCTCGGCCAGAACGGCGTACGGATCTTCATGCACGGTGGTGGCGCCCATACGGCGGGTC GGCTCTACACCGAACAGTTACTGGGGTTTCTGCAGATTCCGCTGTGCCGTGACTGGCAGCAGGTCGGCACAGCGCTGGACAACGGCGGCCTGGCTTTCAT GCCGCTGGTGGACTGGGCCCCCCAGATGCAGCGCATGATCGACCTGCGCAACACCCTGGGCCTGCGCTCGCCGATCCATTCCCTGGCGCGGATCCTCAAC CCGCTGAAGGCCCGGTGCGGTCTGCAGAGTATCTTTCATCCCGGCTACCAGGCAGTGCATCGCGATGCCGGCGGCTTGTTGGGGGATACGGCCATCGTGA TCAAGGGCGACGGTGGTGAAATCGAGATCAACCCGGATGCCGACAGTCACCTGTATGGCACCACCGGCGGTGCCAGCTGGGATGAAGAATGGCCACGGCT GTCACAACAGCGTCACGTCAAGCCGGAAAGCCTCGACCCCGAACACCTGAAAGCCCTCTGGCGCGGTGACGTGGCAGACAGCTATCCGCAACTGGCGCTG GTCGCCACCATGGCCCTGGCCTTGCGCGGCCTCGGCCTGGCGCGGGAAGAAGCGTTCGAGCGGGCCCGGCAGTACTGGGACACCCGGGATCGATCGATTT AA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGATGATCAGCGCCCAACCTTTGCGCTTTTTGTTCGAACCTATCGGAATAGACTCACCTCCAACGTTTATTGGCCGAGGAGATCGAGATGGGTTTGTTA GTCGAAGGCCGCTGGCAAGATCAGTGGTATGAAAGCAAGGACGGCACCTTCCAGCGAGAACAGGCGCAGCGCCGTCACTGGATCACCGCCGACGGCAGCG CCGGCCCCTCGGGCGAGAGTGGCTTTGCCGCCGAGGCAGGGCGCTACCACTTGTATGTGTCCCTGGCCTGCCCCTGGGCCCATCGCACCCTGATTTACCG CAAGCTCAAGGGCCTGGAAGGCCTGATCGATGTCTCGGTGGTCAGCTACCTGATGCTGGAAAACGGCTGGACCTTCGACAAGGCCCACGGCTCCACCGGC GACAAACTGGACAACCTGCGCTTCCTGCACCAGCGCTACACCGCCGACACGCCGGACTACACCGGCCGCGTCACCGTACCGGCGTTGTGGGACAAGCGCC
|
|
| Amino Acid Sequence |
>hypothetical protein
MTDVPSLTLETPAEHPFAQFVRILGKGKRGARDLTREEAREAMGMVLDEQVEDTQLGAFLMLLRHKEESAEEMAGFTEALRARLDAPALAVDLDWPTYAG KKRHLPWYLLAAKCLGQNGVRIFMHGGGAHTAGRLYTEQLLGFLQIPLCRDWQQVGTALDNGGLAFMPLVDWAPQMQRMIDLRNTLGLRSPIHSLARILN PLKARCGLQSIFHPGYQAVHRDAGGLLGDTAIVIKGDGGEIEINPDADSHLYGTTGGASWDEEWPRLSQQRHVKPESLDPEHLKALWRGDVADSYPQLAL VATMALALRGLGLAREEAFERARQYWDTRDRSI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|