Pseudomonas mediterranea CFBP 5447, N005_RS06900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGACGGCCAGGGGCTGGGAGCAGATGCATGCAGCCGTAGCCACGGACGGTCCTTGGGATCGACTGGTGAGTTCGCCGCTGCAACGATGTGCGCGCTTTG CCGAGCAGCTCGGCAGCCGACTCAATCTGCCGGTGCACCTGGACGCGGATCTGCAGGAACTGCATTTCGGTGCCTGGGAGGGCCGCAGCGCCGCGGCGTT GATGGACACCGACGCCGAGGCTTTGGGCCGGTTCTGGGCCGATCCTTATGCTTTTACACCCCCCGACGGGGAGCCGGTGCTAGCGTTTTCGACGCGGGTC CTGGCGGCGGTGGAGCGCCTGCACGCGGCTTACGCGGGGCAGCGGGTGTTGCTGGTCAGCCATGGCGGCGTGATGAAATTGTTGCTGGCCCAGGCCCGAG GCCTGCCCCGGGAGCAATTGCTCAACGTTGAAGTGACCCACGGGGCGCGGTTCTCCCTGCGGGTGTCGTCCGGTCCGGTCTTGACGGAGATGAGCTGAAG
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| DNA Sequence for Gene |
>N005_RS06900
ATGCTGCCGTTCTGGATCGCCCTGCAATTTCTCAGCAGCTTGCCGGTTCGCCTGCTGGGCATGCCTGAGCCGGCGCAGCTTGGCCGGTCGCTGCTGTTCT ATCCGCTGGTGGGGTTGTTGTTCGGTGCGTTGCTGTGGGGCTTCAATACCTTGCTGCCCGGTACGCCGTTGCTGCTGCATGGCGCGTTGCTGCTGACGGC CTGGGTGCTGCTCAGTGGCGGCCTGCACCTGGATGGCCTGGCTGACAGTGCGGACGCCTGGCTCGGTGGTTTTGGCGACCGTGAACGTACGCTGCTGATT ATGAAAGACCCGCGCAGTGGCCCGATTGCGGTGATCACCTTGGTGTTGGTGCTGCTGCTCAAATTCGCGGCGCTGCTGGCGCTGCTCGAACAAGGGCAGG CCCTGGTGTTGCTCATCGTGCCGGTATTGGGGCGTGCGGCGCTGCTGGGCCTGTTCCTGACCACGCCTTATGTGCGTGCCGGCGGATTGGGCCAGGCACT CGCCGATCATCTGCCGCGACCTGCGGGGTGGCAGGTCTTGTCGGCCTGTGCGCTGGGCTGCGTGCTGGTGGCGGGATGGGCCGGGGTCTGGGCGCTGATC ATCGCCGCGGTGGTGTTCATCGGATTGCGGCAGATGATGTTGCGTCGGCTGGGTGGGTGCACCGGCGACACGGCGGGGGCCTTGTTGGAGCTGCTTGAGA TGGCAGTGTTGGTGGGGATGGCATTGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACCTTGCTCCCACAATTTGCTGCCACAGGTTTTCCTCATCAAGCGATACATTTAAATTTGCATTCATCCAGTTAACGGGTATATACACGCATCATGCTT CCTTCCCAATGTCTGTGCATCAACCTGCGTCGCGCCGCTCGAGGCGTCAGCAGGTATTACGACGGCGCTCTCGATGGCTTCGGGATCAACGTTGCCCAGT ATTCCTTGCTGAACAACCTGGCGCGCCTGGATCAGCCGAGTATTTCGTCCCTGGCCGAGGCCATGGGCCTGGACCGCAGCACCCTGGGGCGCAATCTTCG GGTCCTGGAGGGCGAGGGGTTGGTAGCGCTTGCCGAGGGTGAAGACATGCGCAACCGCATCGTCGTCCTGACGCAAGCCGGACGCGACCGACTGGCGGCG GCGTTGCCCGCCTGGGAAGCGGCGCAACAACGATTGATCGATAAACTGGGCGCCGAGAAGCGCACGGCACTGCTGGCCTTGCTGGACGAACTGGCGTAAA
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| Amino Acid Sequence |
>cobalamin synthase
MLPFWIALQFLSSLPVRLLGMPEPAQLGRSLLFYPLVGLLFGALLWGFNTLLPGTPLLLHGALLLTAWVLLSGGLHLDGLADSADAWLGGFGDRERTLLI MKDPRSGPIAVITLVLVLLLKFAALLALLEQGQALVLLIVPVLGRAALLGLFLTTPYVRAGGLGQALADHLPRPAGWQVLSACALGCVLVAGWAGVWALI IAAVVFIGLRQMMLRRLGGCTGDTAGALLELLEMAVLVGMALI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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