Pseudomonas mediterranea CFBP 5447, N005_RS06870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGGCCTGATGCAACCGTGGCGGTTCATCCGCATCAGCGACCGCGCATTGCGCGCAGACATCCAGCAATTGGTGGAACAGGAGCGCATTCGCACCGCCG AGGCCCTGGGCGAACGCAGCGATGAATTCATGAAGCTCAAGGTCGAGGGCATCAATGACTGCGCCGAAGTGCTGGTGGCGGCGTTGATGGATGATCGCGA GCGGCACATCTTCGGCCGTCGGACCTTGCCGGAAATGGACCTCGCCTCGCTGTCCTGTGCGATCCAGAATCTGTGGCTGGCTTCCCGCGCCGAAGGGTTG GGGATGGGCTGGGTTTCGCTGTTCGAGCCCCAGGCTTTGGCCGATCTGCTGGGCCTGCCTGCGGGCGCCAAGCCCCTGGCGATACTCTGTCTCGGCCCGG TGGAGAGTTTTTATCCGGCACCGATGCTCGCCCTGGAGGGCTGGGCACAACCGCGTTCACTCAATGAACTGCTCTATGAAAACCGTTGGGGAGTGAACCC
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| DNA Sequence for Gene |
>N005_RS06870
ATGAGTGTCGCGTTGCTCAGTGCCGCCGCCGTAGCGCTGGATGCACTGCTGGGGGAGCCGCGGCGCTGGCATCCGTTGGTGGCGTTCGGCCGTTTTGCCG ATCGCATCGAACAACGCTTCAATTCCGGCGGGCGCGGCTGGCGCAGCCATGGGGTCACGGCGTGGGTGATTGCGGTGGTGCCGTTGACCCTGCTCGCCAC GGCCCTGTCCTGGGCGCCGCTGGTGGGGTGGCTGGTGGATATCCTGGCGCTGTACTGCGCCCTCGGCCTGCGCAGCCTCGGCGAACATGTCGAGCCGGTG GCCCGGGCGCTGCGCAGCGGCGATCTGGAGGAAGCCCGCACCCGCGTCGGCTATCTGGTCAGCCGCGAAACCCGTGAGCTGGACGAAACCGCCGTGGCCC GCGCAGCCACCGAGTCGGTGCTGGAAAACGGCAGCGACGCGGTATTCGCCGCGCTGCTCTGGTTCGCCGTGGCGGGAGCGCCCGGTGTGGTGTTGTATCG CCTGAGCAATACTCTTGACGCCATGTGGGGCTATCGCAACGAGCGCTTCGAGCGCTTTGGCTGGGCAGCGGCAAAAATCGACGATGTGCTGAACTACATT CCGGCGCGGCTGGTGGCGTTGACCTACGCGCTGCTCGGTAAAACCCGTCTGGCGCTCAAGTGCTGGCGCAGTCAGGGCCCGACCTGGGACAGCCCCAATG CCGGGCCGGTCATGGCCGCCGGTGCCGGTGCGCTGGGTGTCGAGCTGGGGGGCGCAGCGGTGTATCACGGGGAGCTGCACCAGCGTCCGCCGCTAGGCGA GGGCGTGCCGGCGAGTGCCGATTCCATTGATCGCGGCTGGCAACTGGTGCAGCGCGGCGTATGGTTGTGGTTGCTGATTCTCTGCCTGGGAGCTGAGTTC TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGCGGACGCCTGCGCAAGGCGGTCCGGGAATATGGCATTGCCGAGGTGGATTGGCTCGACCTGTCCAGCGGCCTGGCGCCATGGCCGTTCGATGTT CCGGCGATTCCTTTGCGGGCCTGGGCACGCCTGCCTGAAACCGATGACGGGCTGGAGCAGGCTGCCTGCACTTATTACGGGGCGGCCCAGGTACTGCCGG TGGCCGGTTCGCAGATGGCGATCCAGCTATTGCCGCGCCTGCGTCGCAGCGGCAAGGTCGGTGTCCTGTCGCCCTGTTACGCCGAGCACGCCGAAGCCTG GCGCCGCAACGGTTACATCGTGCGTGAGGTGCTGGAATCGGAAGTGGATTTCTTCCTCGATAGCCTCGACGTGCTGGTGGTGGTCAACCCGAACAACCCC ACGGGCCTGAACCTGAGCCCCGAGCGTTTGCTGGACTGGCACGCCCGACTGGCCCAGCGTGGCGGCTGGCTGGTGGTGGACGAGGCCTTCATGGATGTCA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLSAAAVALDALLGEPRRWHPLVAFGRFADRIEQRFNSGGRGWRSHGVTAWVIAVVPLTLLATALSWAPLVGWLVDILALYCALGLRSLGEHVEPV ARALRSGDLEEARTRVGYLVSRETRELDETAVARAATESVLENGSDAVFAALLWFAVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDVLNYI PARLVALTYALLGKTRLALKCWRSQGPTWDSPNAGPVMAAGAGALGVELGGAAVYHGELHQRPPLGEGVPASADSIDRGWQLVQRGVWLWLLILCLGAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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