Pseudomonas mediterranea CFBP 5447, N005_RS06450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACCCGGCCGTGATCGCTTCGCCGAGGATGATCAGCCAGTAGGCGCCATGCCACATCCATGGCTGAGTGATAGCGCGGTAGCGAGCGGCGTTGTCCGGGA AGGTGGTGTCCATGCTCAGCACGTGCTGGACGAAGTTGAAGTTGGATCGGTAGTCCGTGACGTTATTGAACACCGTCAGGAAGGCGAATGCGGCGAGTGC CAGGGTCATTGCGATTTTTGCGTAACGAGCCGTCATGGGTGCGTCCTTTGCATTTTTGCGACAAAAGGCACGTTAGCACGCCCGCATGCAGTACCGAGGG GCGTCGTGCTGTCAGAAACCGCTGATTCATTCGTACGACGACCGGCCACGACGCGGAACGTGCCTATCGGAAAAAACACCGTACTTTGGCGGCTGTTATC CCTCTGCCTGTAAGGCAAATCTGTTTTTCATGACATCCCATCAACTCTCCGTATGACTCATGCAGAATCCCCCGCCTTTCATTCTGCTGAGATACATCGG
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| DNA Sequence for Gene |
>N005_RS06450
ATGTTCTCGCCTGCCAACCAACCGCGCTTCACCCTGACGCTCGACAGCGGGCCGAATGAACTCAAGGTGCTTGAGTTCACGGGCCAGGAAACCATCAGCC AACCCTATCGCTTTGACCTGGAACTGGTGAGTGAGCGAGCGGACCTGGCATTGGAAGCGCTGCTGCATCGCCAGGCCTACCTGGCCTTCGATCAGCAGGG GCGTGGCATCCACGGCCAAGTCTACAGCGTAGCCCAGGGCGATTCGGGCAAGCGCCTGACCCGTTACCAGATCAGCTTGGTGCCGCGCCTGGCGTACTTG CGTCACCGTATCAACCGACGGATTTTCCAACACTTGAGCGTGCCGTCGATCATAGCGCGGGTCTTGAAGGACCATGGCATCCAGGGCGATGCGTTTGAGT TCAACCTCGGCGGACAATATCCCGAGCGGGAATACTGTGTGCAATACGGTGAAAGCGATCTGGCATTCATCGAGCGCATCTGTGCCGAGGTCGGTATTCA TTACCACTTCCGTCACAGTCCTGACGGCCACCTGCTGGTCTTCGGTGACGATCAGACGGTGTTTCCCCGTTTGCCCGAGTCGACGCGGTATTTGCCAGGC AGTGGCATGGTCGCCGGAGAGCCGGCGATCAAGCGGCTGGCTGTTCGCCTCCAGACCCGGACCAGCGCTGTGACACTGTGCGACTACGATTTCCGTAACC CCAGCCTGCCTTTGCAAACCAGCCTGGACAGCCAGCAGCAACCCGTGCTGGAGGACTATCGCTACCCCGGCCTGTTTTCCGACCGCGATCATGGTCGGCA CCTGACCCGGCGCGCCCTGGAGCGTCATGGGGCTGATTTCCGCCTGGCCGAAGGGCGCAGCGACCAATGCGCCCTGGTCAGTGGACATTTCATGCGAATC GATGGGCACCCGCGGGAGCAGTGGAACGACCTGTGGCTCCTGACGCAGATCACCCACCGCGGACGCCAACCGCAAGTGCTGGAGGACATGGTCACAGAGG GCGAGGATGAGTTCCAGGGCTACAGCAATACCTTTCTGGCGACGCCGTGGGACGTTTTCTTCCGGCCGCCGCTGCTTCATGAGAAACCTGCCGCCCACGG TTATCAGCCTGCGGTGGTGAGCGGACCTGTCGACAGCGAAATTCATTGCGACGAGTTCGGACGGGTCAAGGTGCAGATGATCTGGGATCGCGACGGTGAG GGTGACGAGCATTCCAGTTGTTGGCTGCGGGTAGCCACCGGCTGGGCCCATGATCGATATGGCAGTGTGATGATTCCCCGGGTCGGCATGGAAGTCCTGG TGGGCTTCATGGATGGCGATGTGGACAAACCACTGGTGGTAGGTTGCTTGCCCAACGGTGCCAACCCGTTGCCGCTGGATCTGCCGGCGGATAAGACCCG CAGCATATTGCGCAGCCAGAGCAGCCCTGGCGGGGGCGGTTATAACGAGCTGCGCATCGAGGATCGCAAGGGGGCCGAGGAGATCTACCTGCGGGCCCAG CGAAACTGGACCCAGCATGTGCTTCATGACCAGCGCGTGCAGGTCGATCACGAGCGCAGCGTTGTCGTCTCCGGCACGGCACGGCATGAGCTCAAGGCCG AAGAGTTGCGTATCACCCATGGGCGGCGCCAGGTCGAAGTGCGGCAGGACGATCACTTGATGGTGACTGGCGAGCGGCACATCCGCGTGACCAGCCAGGC GCTCAGTGCCAGCCAGCATTTCCATGTCGGCGCTGGTCAGCAGATCGTGCTGGATGGCGGCGCCAGTGCGACCGTCCAGGCCGGTGGGCACTGGATCAGC ATCGGCGCGGGCGGGATTTTCAGTAGCGTGCCCATCGAGGTCGGCGGCGGGCCGATGGCGGTGATCCGCGCGACGCCGGGCTCGCCGGATCATCCCGAGA AGCTTGTGGCTGCCGTGGCCGCTCCACTGTCGTTGGCGCAAATCCTCAGCCTGCAAGGCCCGGCGCCGTTCTGCGAAGAATGTGAGCGGTGCAAGGACGG CATCTGTGCACCGTTGTCCAGGTTTTCCAAACCCACTGTTATCCAGGAGCGCCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATACGAGTCAGTCGCCTCAGGCCTGGCTTGGGCAGCACCCGTTGCAAGCATCCGAGCAGCTTTTCGCTATCTTCAGCAATGCCAGCAGCGCCAAGCCGCT GGCGGCCTGGAGGCGCTCGATGGCGTTGGTGCCCGGTCCGATCTGGGCGGACACGCCTTACGCTGACTGGGAGCCCGTCATGCCCTATGTGGGCGCAGTC TCTGTCGACAGTGAGTTTCTTCAATGGGTTGCGACGACCGACTCGCTCGATTGGGGTTGGCTGGCGGTGTCTTCGGTCGGTCAGGAGGTCCTCGTCGAGC ATCTGCGTGGGCTCACTCAGGTGCTGTTGCCGGGCGGCCAATCGGCTTTTTTCCGTTTTTGGGATGGGCGTTTCGTGCAGTCCATCCTGCAGTCCGATGA CGTCGATGCCGGGCAGTTACTGCCGGTCATCAGTCGTTGCCTGGTCAACGGTCGGGCCCTGGAGATCCTGGGAAATGCCCAGCAGCCGCCACGAACTTTC
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MFSPANQPRFTLTLDSGPNELKVLEFTGQETISQPYRFDLELVSERADLALEALLHRQAYLAFDQQGRGIHGQVYSVAQGDSGKRLTRYQISLVPRLAYL RHRINRRIFQHLSVPSIIARVLKDHGIQGDAFEFNLGGQYPEREYCVQYGESDLAFIERICAEVGIHYHFRHSPDGHLLVFGDDQTVFPRLPESTRYLPG SGMVAGEPAIKRLAVRLQTRTSAVTLCDYDFRNPSLPLQTSLDSQQQPVLEDYRYPGLFSDRDHGRHLTRRALERHGADFRLAEGRSDQCALVSGHFMRI DGHPREQWNDLWLLTQITHRGRQPQVLEDMVTEGEDEFQGYSNTFLATPWDVFFRPPLLHEKPAAHGYQPAVVSGPVDSEIHCDEFGRVKVQMIWDRDGE GDEHSSCWLRVATGWAHDRYGSVMIPRVGMEVLVGFMDGDVDKPLVVGCLPNGANPLPLDLPADKTRSILRSQSSPGGGGYNELRIEDRKGAEEIYLRAQ RNWTQHVLHDQRVQVDHERSVVVSGTARHELKAEELRITHGRRQVEVRQDDHLMVTGERHIRVTSQALSASQHFHVGAGQQIVLDGGASATVQAGGHWIS IGAGGIFSSVPIEVGGGPMAVIRATPGSPDHPEKLVAAVAAPLSLAQILSLQGPAPFCEECERCKDGICAPLSRFSKPTVIQERP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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