Pseudomonas mediterranea CFBP 5447, N005_RS01740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGCCCAACCGTAGTCGGCCGGATAAATGTCACTGGTCAGGCGCTCTTCATAGCCGTGCAGCTGATCCGGCCCACAGAAGTGCATCTTGCCGGACAGCG CCGTGCGGTAGCCGAGGCGCCGCAGGTAATGGGCGTACGTCGGGACGTCGGCCGGAAAATCCGCGGCGTTGTCATAGGCGCCGATCTTGCTGGGCAACTG GCCGCTCACCAGGGTAAAGCGCGACGGCGCGCACAGCGGGCTGTTGCAGTACGCGGCGTCGAACACCACGCCCTGGTCGGCCAGGCGCGACAGATTCGGC AGCTTGATCGGCGAAGGACCGTAGATCGGCAACATTGGCGCGGCCATCTGATCGGCCATGATGAAAAGAATATTCTTGCGCTTCATGTAATCGCGGCATT CCATAGTGAGCGGTTATGCGAAATTGCTGCGATTGAGCATGTTCCCCCGACCTATTGGGGTAAAGCCCATGCAGGATAATGACTAGGATAAGCACAGCTT
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| DNA Sequence for Gene |
>N005_RS01740
ATGTATGACGCCTTGGGTGACCTGTCCCTGGATCTGTTTCGAGTCTTCGAAGCAGCGGCCAGGCAACGAAGCTTTACGGCAGCGGCGATTGAGCTGGGCA CCACGCAACCGGCCATCAGCCAGCAGATCAAACGCCTGGAGGAACAGCTGGGCACGCGGTTGTTCGATCGCATTTACCGCGGCATAGAACTGACCGAGGC CGGAACGACGCTGTTCGAACAGGTGCAGGCCGGTTTGCAGAACATCGACGCAGGATTGAGCGCGATCACCGCGCAACATCAGCATGAGGTGTTACAGGTC GCCACCGATTTCGCTTTCGCCGCCTACTGGCTGATGCCGCGCCTGCATCGTTTTCACGCCGCCAACCCGCAAGTGGACGTCAGCCTGGTGACCAGCGAGC GCAATCACAACATGTTGCGCACCGACATCGACGTTGCCGTACTGTTCGGCGACGGTCGCTTCAAACAGGGCGAAAGTCGCTGGCTGTTCAGCGAAGAAGT CTTTCCGGTGTGCAGCCCGTTGTTGCTCAAGGAACGTCCCCTGCCCTTGCCCGCCCAGGCCTTATCCGAGTTCCCGCTCCTGCACTTGCGCGGTGGCAAC AGCAGTCACTGGTTCGACTGGAATGGCGTCTTCCGCGAGCTGGGCATCACCTCACCCCCGGCGCCAGGGCAACTGCGTTTCGACAACTACACCTTGCTGA TCCAGGCGGCGATTGGCGGCCAGGGGGTTGCCATCGGCTGGCGTCACCTTGTGGATAACTTGTTGGCCCAGGGCCTGCTCTGTCGTCCAATCGCCGAAAC GGTGCTGTCGCGCCTGGGGTATTACGTAGTCCTGCCCCAGCGTAAACGGCGTGGGGCACTGATCAGGCAGTTCGTGGATTGGCTGATGGAAGAACAGGCC AACAGTGGCGAGTCGCTCACGGGGTTGCCGTTGCCGTCCATCGCTGTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACTTGCGGGTGAAGGCACTTCCATAGCCAAAGAAAAACTACTGTGGCGAGGGGATTTATCCCCGCTGG
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MYDALGDLSLDLFRVFEAAARQRSFTAAAIELGTTQPAISQQIKRLEEQLGTRLFDRIYRGIELTEAGTTLFEQVQAGLQNIDAGLSAITAQHQHEVLQV ATDFAFAAYWLMPRLHRFHAANPQVDVSLVTSERNHNMLRTDIDVAVLFGDGRFKQGESRWLFSEEVFPVCSPLLLKERPLPLPAQALSEFPLLHLRGGN SSHWFDWNGVFRELGITSPPAPGQLRFDNYTLLIQAAIGGQGVAIGWRHLVDNLLAQGLLCRPIAETVLSRLGYYVVLPQRKRRGALIRQFVDWLMEEQA NSGESLTGLPLPSIAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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