Pseudomonas mediterranea CFBP 5447, N005_RS00375

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas mediterranea CFBP 5447 scaffold2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAAATCGCCACCCGCGATCGCCTCCAACCCTCCCTATTGGACCGGTTGACCGATGACGATCCGACCAATCCCAAGGAAAGCGCCGACAAGCGCGTGCTGT CGCTCACCCAGTTGAAAGCCTCGGTGCTGCGCGACCTGGCGTGGCTGCTCAACACCACCTCGCTGCTCGACGCTGACGCCACCCTGCACACCCCGGCGGG AACCTCGGTGGTGAACTTCGGGCTGCCGGCGCTGGCTGGCAACAGCGCCTCGAACGTCGATCTTTCGGCGCTGGAAGCTTTGATCCAGCAGGCCATCGCC ACCTTCGAGCCACGCATCCTGCGCCATACCTTGCGCGTGCGGGCCCGGTCGACGGCCGAGATGAACCACAACGCCTTGAGTTTCGAGATCGAAGGCGACC TCTGGGCCCAACCGGTGCCGCTGCGCCTGATGCTGCAAACCGACCTGGACCTGGAAACCGGCCATGTGCGCGTAGTCAACGCCGATCAGCGGAGACGCTC
DNA Sequence for Gene
>N005_RS00375
ATGAACCCGCGCCTGCTGGAGCTGTACAACCAGGAACTGCACCACGTGCGCGAAAGCGCCGCGGAGTTCGCCAAGGAATACCCCAAGATCGCCAGTCGGC TGACATTGTCCGGCATGGACTGCGCCGACCCCTATGTCGAGCGGCTGCTGGAAGGGTTCGCCTACCTGACGGCGCGGGTGCAACTCAAGCTCGACGCCGA GTACCCGACCTTCACCCACAACCTGCTGGAAATCGCCTATCCCCATTACCTGGCGCCGACGCCGTCGATGACCGTGGTGCAGATGCAGGCCGATCCGGAC GAAGGTTCGTTGAGCAGCGGCTTCGAGCTGCCCCGGGACAGCGTCCTGCGCGCCGCCCTGGGGCGTGAAACCCAGACCTGCTGTGAGTACCGCACCGCCC ACTCGGTGACGTTGTGGCCGTTGCAGGTCAGCCAGGCCGAGTACTTCGGCAATCCATCCACGGTACTCGGACGCCTGGCCGCCAGTGAGCCGAAAGCCAA GGCCGGCCTGCGCCTGACCCTGCGCACCGGTGCCGAATTGCCGTTCAACAGCCTGGCCCTGGACAATCTGCCGCTGTACCTCAGCGGTGCGGACGAGCAA CCGTTCCGCCTCTACGAACAACTGCTGGGCAGCGCCTGCGCGGTGTTCGCCCGCCAGCCCGGTGGCCATTGGGTCGAGCGGCTGCCCCAGGATGCGTTGC GCTCCCGTGGCTTCGATGACGTCGACGCTGCGCTGCCGGTAGTGCCGCGGGCATTCCAGGGCTATCGCCTGCTGCAGGAATACTTCGCCCTGCCCCAGCG CTTCCTGTTCGTCGACTTCACCCAACTGGGCCGGGCGGTCAAGCGCTGCGACGGCCAGGAGTTGGAGTTGATCGTGCTGTTCGACCGCCACGACCCGAGC CTGGAAGGCAGCGTTGGTGCCGCGCAGTTCCTGCCGTTCTGCACCCCGGCCATCAATCTGTTTCCCAAGCGCCTGGACCGCATCCACTTGTCGGACCGGG TCAACGAACACCACGTGATCGCCGACCGCACCCGGCCGATGGATTTCGAAGTGCATTCGCTGACCGGCCTCACCGGCCACGGTACCGGGCCGGAGCAGCC GTTCCTGCCGTTCTATGCCGTGCGCGACCCGTCCCGCTATGGCCGCGACCAGGCCTATTACACGGTGCGCCGTGAACCACGGGTGTTGTCCAGCGATCAG CGACGCAACGGCCCGCGTTCGACCTACGTCGGCAGCGAAACCTTTGTCAGCCTGGTGGACAGCCACCAGGCGCCCTACCGCCATGACCTGCGCCAACTGG GCGTGACCGCGCTGTGCACCAACCGCGACCTGCCGTTGTTCATGAGCGTGGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGCGCACCGGTCGGCGC CGTGCGCTGCGTCGCCGGGCCGAGTCGGCCGCGGGCCAGCCATGCCCACGACGCCAAGGCCTGGCGGCTGATCAGCCAGTTGTCGCTGAACTACCTGTCC CTCAGTGAACAAGGCCAGGGCGCCGCCGCCCTGCGCGAACTGCTGCGCCTGTACGGCGACAGCAACGACGCGGCGCTGCAATTGCAGATCGAAGGCCTGC GGGAAGTCAGCAGCAAGGCCTGCACCCGCCGCTTGCCGATGCCCGGCCCGATCGTGTTCGGCCGGGGCCTGGAGATCACCCTGGAATTCGATGAAAACGC GTTTCGCGGCACCGGGGTGTTTCTCCTTGGCGCGGTGTTCGAACGCTTCCTGGCACGCTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACC ACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCGGACGTCGTCCGACCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTACCCTGGACGCGATGCACCAGGAACCCTGGGAGTACGACTTCTTCCAGGCGTTGCGGCGCATCGAGTGCGAAACCCCCGAACTGCCGCGCCTGGGCCA TTCCCTGCGCCTGGCCGATGACCCGCTGCGCCTCGGACAACAGGCCGACTGCACCTTTGCCCCGGCCACCCTCGCCTCGGTGCAACCGGGCGTCGACGGC GCGCCGGCGCGGCTGGAACAGTTCTTCTTCGGCCTCGGCGGCCCCAACGGCCCGATGCCGTTGCACATGACCGAGTACGTGCGCGAGCGTCAGCGCAACA ACGCCGACAGCACCAGCAAACGCTTCCTCGATGTGTTCCACCATCGCCTGCTCAGCCTGTTCTACCGGGCCTGGGCCGAAGCGCGGCCAACGGTCAGCCA TGACCGCCCGAACGATGACTACTGGTCGGCGCGCCTGGCGGCGCTCAGCGGCCGGGGCATGCCGAGCCTGCTCAAACAGGGGCTGATCCCCGACACGGCG
Amino Acid Sequence
>type VI secretion system protein ImpG
MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQMQADPD EGSLSSGFELPRDSVLRAALGRETQTCCEYRTAHSVTLWPLQVSQAEYFGNPSTVLGRLAASEPKAKAGLRLTLRTGAELPFNSLALDNLPLYLSGADEQ PFRLYEQLLGSACAVFARQPGGHWVERLPQDALRSRGFDDVDAALPVVPRAFQGYRLLQEYFALPQRFLFVDFTQLGRAVKRCDGQELELIVLFDRHDPS LEGSVGAAQFLPFCTPAINLFPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHSLTGLTGHGTGPEQPFLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQ RRNGPRSTYVGSETFVSLVDSHQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVGAVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLS LSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKACTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRT TERGEIMRWKAKPGRRPTL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site