Pseudomonas mediterranea CFBP 5447, N005_RS00350
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mediterranea CFBP 5447 scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGCCTCGAGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGTTGCCCT TCGTCATGGGCGTAATGGCCGACCTCGCCGGCAAGCCCGCCGAGCCTCTGGCACCCGTGGCCGATCGCAAGTTCCTTGAGATCGATGTCGACAATTTCGA CTCGCGCCTCAAGGCCATGCAACCACGCGTAGCGTTCCATGTGCCCAACGAACTGACCGGCGAAGGCAACCTGAGCCTGGACCTGACCTTCGAAAGCATG GACGACTTCAGCCCGGCAGCCGTGGCCCGCAAGGTCGACTCGCTGAACAAGTTGCTCGAAGCACGCACCCAACTGGCCAACCTGCTGACCTACATGGACG GCAAGACCGGCGCCGAAGAAATCATCATGAAGGCGATCAAGGACCCAGCGCTGTTGCAGGCCCTGGCGAGCGCGCCGAAGCCAGCACAGGATCAATGATC
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| DNA Sequence for Gene |
>N005_RS00350
ATGACCGACAATACCGTCCGCGAAGGCGCACAGAACCTGGGCGCGACTGAAGAAACCAGCGAGTTCGCGTCCCTGCTGCTGCAAGAGTTCAAGCCCAAGA CCGAGCGTGCCCGCGAAGCGGTCGAGACCGCCGTGCGTACCCTGGCCGAACAGGCCCTGGCGCAGACCGACCTGGTGTCCAACGACGCCATCAAGTCGAT CGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAACCAGGTGATCCATCACCCGGATTTCCAGCAGCTGGAAAGCGCCTGGCGTGGC CTGCACTACCTGGTCAACAACACCGAGACCGATGAGCAGCTGAAGATCCGTGTGCTCAACATCTCCAAGACCGACCTGCACAAGACCCTGAAGAAATTCA AGGGCACGGCGTGGGACCAGAGCCCGCTCTTCAAGAAGATGTACGAAGAAGAATACGGCCAGTTCGGCGGCGAGCCATACGGCTGCCTGGTGGGCGACTA CTACTTCGACCAGTCGCCACCGGACGTGGAGCTGTTGGGCGAGCTGTCGAAAGTCTGCGCAGCGATGCACGCACCGTTCATTTCCGCCGCGTCGCCGACC GTGATGGGCATGGGCTCCTGGCAGGAACTGTCGAACCCACGCGACCTGACCAAGATCTTCACCACGCCGGAATACGCCGGCTGGCGTTCGCTGCGTGAAT CGGAAGACTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTGGCGCGCCTGCCGTACGGCGCCAAGACCGACCCGGTGGAAGCCTTCGCCTTCGAAGA AAACACCGACGGCGCCGACAGCTCGAAATACACCTGGGCCAACGCCGCCTATGCGATGGCCGTGAACATCAACCGCTCGTTCAAACACTTTGGCTGGTGC TCGCGCATCCGCGGCGTGGAGTCCGGCGGTGAAGTGGAAAACCTGCCGGCCCACACATTCCCGACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCG AGATCGCCATTTCGGACCGCCGTGAAGCGGAACTGGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATCGGCGC CCAGTCGCTGCAGAAACCGGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCTTGCCGTACCTGTTCGCCACCTGCCGTTTC GCTCACTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGCTGCAGGACTGGATCCTCAACTACGTCG ACGGCGACCCGGCGCATTCCACCGAAACCACCAAGGCCCAGCACCCACTGGCAGCGGCCGAAGTGATCGTCGAAGAAGTCGAAGGCAACCCGGGGTACTA CAACTCCAAGTTCTTCCTGCGCCCGCACTATCAGCTCGAAGGACTGACCGTGTCGCTGCGCCTGGTTTCGAAACTGCCTTCGGCCAAGGGCGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAACCAGCTGAATGGTACGCGGTAGAAATGTGGGAGCGAGCCTGCTCGCGATGGCGGTGGATCAGTCACCACCTGTGTCGCCTGACACGCCGTCATCGCG AGCAGGCTCGCTCCCACAGGGATCTTCGTTGAGTTGAAGATCGCTGTTGAACACAGAATTCGCAGGTCGGCGTCAAACCAAACAATGTGGTTAGAAACCA CACAGGGAGAAAACATGGCTGTTGATATTTTCATCAAGATCGGCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAGATCGACGTCCTGAA CTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACATGGGCAGTGGCGGTGGCGCCGGCAAGGTAAACATCCAGGACCTGTCGCTGACCAAGTACGTC GACAAGGCTTCGCCGAACCTGATGATGCACTGCGCCAGCGGCAAGCACATCGACAAGGTCAAGCTGACCGTGCGCAAGGCCGGCGGTGAAAGCCAGGTCG
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MTDNTVREGAQNLGATEETSEFASLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQVNQVIHHPDFQQLESAWRG LHYLVNNTETDEQLKIRVLNISKTDLHKTLKKFKGTAWDQSPLFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGELSKVCAAMHAPFISAASPT VMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFGWC SRIRGVESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFFLRPHYQLEGLTVSLRLVSKLPSAKGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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