Pseudomonas lundensis DSM 6252, TU74_RS05075
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 4_247651_33.8192, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTGCGCCAACTGCCCGGGCGCACCCGTGTCGGCGTGTTGCAGGCCGCTGTTGAAGTGACGGCCCGTCGGTCATCCGGTCAGCCTGTGCGGGTGGAGGCT GGGCAGCAAGTGACGTTTGATCCCGAGGCGATCGAGGGCATTAGCCCTTTAGCAGCAGGGTCGACGGCCTGGGTCCACGGCATGCTGCGTGTGGACGACT GGCGGCTGGGGGACTTTGTCGAGGAACTGAACCGCTATCGGCCCGGCGTGTTGCAGTGTGCGACAGCGGTTCAGGACCTACGTATATCGGGCGCTTTTCG TATCGATGACACCGAAACCGTACTGGAGAACCTGAGTAAAACCCTGCCGGTAAAGGTGCGTTTCATGACCCGCTATTGGGCCAGCATCGAGCCCGCTTAA AAGGTTTTCTGTTGAACCTTGCTGATTTTGATTCTCATCCGTCAATGACATAAGCCGCGATCGCAGCGAGTTACTGCCATGACAACGCAAGGATCACCCA
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| DNA Sequence for Gene |
>TU74_RS05075
ATGCACCCGCTCCCCCTCACTGCCACCCATAAAATCACCCGCGCTGTGCGCCTGTCGCTGCTGGGCGCGTCCCTGGCCAGCCTGTCTGCGCTGGCGATGA TGCCCGCGCTGAGTTATGCGCACAGCCAAACGACCTACCAGATACCGGCTGGCCCGCTGGGCAGCGCCTTGACCCAATTTGGCGTGCAAGCGGGGGTGAC GATTTCGTTTGATACCGAGCAGGCTCGTCAGCTCACCACGGCCGGGCTTGAAGGGTCATACAGCATTGAAGAGGCGTTGGACCGCTTGCTGGCCAGCAGC GGGTTGCACGCCGAGCGTCAGACGAACGGGGGCTATGTGCTGGTCGCGCGCAGCCTTCAGTCCGGCCTGGAGCTGGGTGCCACTGAAGTGGTGACCAACC AGTTGGGTTCAGTGACCGAAGGCACTGGCTCTTACACGCCGGGCTACATCGCCACGGCCACGCGCATGGTGCTCAAGCCCCGCGAGACACCGCAATCGAT CAGCGTCATCACCCGCCAGCATATGGATGATTTCGCGCTCGACAACGTTGACGATGTGATGCGTCACACCCCTGGCATTACCGTCTCGGCGTACGACACG GACCGGACCAATTACTACTCGCGCGGTTTCTCGATCAACAACTTCCAGTACGACGGCATTCCTTCGGCGGTGCGCAACGTTGCCTATTCGGCGGGCAACA CCCTGAGCGACATGGCGATCTATGACCGTATCGAGGTGCTCAAGGGGGCTTCCGGATTGTTGAGCGGCGCCGGTTCGCTGGGCGGCACCATCAACCTGGT GCGCAAGAAGCCCACCCATGATTTTCATGGCCATATCACCACGGGCGCCGGCTCCTGGGACAACTACCGCACGGAAGCGGACGTCAGCGGACCGTTGACC GACAGCGGCAACGTACGTGGCCGCGCAGTGGCGGCCTATCAGGACCGCCAGTCCTATATCGACCGCTACTCCAACCAGAGTTCGGTGTTCTACGGCATCC TCGAAGCCGACCTCACGCCTGACACATTGCTGACCGTGGGCGCCGACTATCAGGACAACCGGCCTCAGGGGTCAACCTGGTCGGGGAGTTTTCCGCTGTA CAACTACGCTGGCGAGATCAACGACGCCAAGCGTTCATTCAGCAATGCCACCGACTGGAGCAGTTGGCAGCAATACACCCGCACCGTCTTTGCCACGCTG GAACAAGACCTCGGCGGTGGTTGGGTCGGCAAGCTGCAACTCGATCACAAGCTCAATGGCTACGACGCCCAGTTGGGCGCCATCCAGTTCAACCAGCCGG CAGCCGATGGCACAGCGACCATCAATGCGCAACGCTACAAGGGTGAAACCACCAGCGATGCGGCTGACCTCTATATCAGTGGCCCTTACAGCATGATGGG GCGTGAACACCAACTGGTGCTGGGCGGCTCGATCAGCAAAGCAAACTGGCAAGGCAAAGGTTTCTGGGACGTTAAGTTCTCCACGCCCAACCTGGTCGAT TACTTCAACTGGAACGGGCACCTGGCCAAACCTGATTGGGGCAGGGCATCACAAATCAGCGATGACACGGTGCGTCAGACGGGCATGTACGGGACCACCC GGCTCTCTATCACCGACGACCTGAATGTGTTTCTCGGTGCGCGAGTGGTGGACTACACCCTGACCGGCACCACCACGACCTACCATGAATCTGGCCGCGT GATCCCCTATGCGGGCATCACGTATGACCTGACCGACTCCCTCACGGCGTACGCCAGCTACACCGACGTGTTCATGCCGCAGGAGTTCTACAACCTGGAT CGCCACAGCAAGATGCTCGACCCGGACCAGGGTGAAAACTATGAAATCGGCCTCAAGAGCGAAATGTTCGACGGCCGCCTGAATGCCAGCCTGGCGTACT TTGAGATCAAGGAAAGCAATCGCCCCATCCCCGACGACGCCTGGAACAACCTGTCGCCCACGCCACCCAACTATGCCTTCAAGGGCACTGCCGCGAGGAC CAAGGGCTATGAGCTGGAAATATCCGGGGAGCTGAGCCCCGGCTGGAGCTTGCAAGGTGGCTACACGCACAAGGTGGTACGCGATGACACGGGCAAGAAA ATCTCGACGTTTGAGCCCGAAGACCAGCTCAGCTTCTACACCATTTACAAACTCAAGGGCGACCTGAGCAAAGTCTCCGTGGGCGGTGGTGCCCGTTGGC AGAGCACGGCCTGGCAAGAAATGTACAACGGCCCGAAAAACCGCTACGAGGATTTCTCGCAGAAGCCCTATTGGCTGGTCGACCTGATGACCCGTTATCA ATTCACGGAAAACCTGTCGACCACCCTTAACGTCAATAACGTGTTCGACAAGTACTACTACACCAACATCGGGTTCTATAACTCGGCGATTTATGGCGAG CCACGCAACTTTATGGTGACCACGCGCTGGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGACGGTCAGGGGCTCACCTTGCCCCTGACGGCCGAAAAAAAGACCCAATGAGTGACGGTCAGTGAGCAGAGGGTGATCGTTGCTCAAGGTTGACAG CACCGCCAGCGCAACTGGTTTTGAGTTGAGGCTAAAAGGCTCTGGATCTGCCTGCCTACAACGAATCAGGGTCCACGCCATTGCCCCTGAGCAGTGCGTC CACCAGCGAGCGGGTCATCTCGACGGAATGCAGCATCGACCAGATCAGCCCTCGCTCTATGCCGCTGGCGCGCTCGGTGATCTCGTCCGAAACCTCCTCG GTGCTTTTGAGCATGATCGACATATGCTTCAAGGCTTCCAGCGCCCGCACGTCACCGCGCACGGCGAAAGGCGAGGCCGGGCTGACTTCGGCGGGTTGAG TCGGTTTGAGTTCGTCCAGCGGGGCGGGTGCAGCGTTGAGGTCATCAAGCAGGCGTCGCGTTTTTTCATCGTGCTGGTGATCGTCGCGCTTTTTCTTCAT
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| Amino Acid Sequence |
>ligand-gated channel
MHPLPLTATHKITRAVRLSLLGASLASLSALAMMPALSYAHSQTTYQIPAGPLGSALTQFGVQAGVTISFDTEQARQLTTAGLEGSYSIEEALDRLLASS GLHAERQTNGGYVLVARSLQSGLELGATEVVTNQLGSVTEGTGSYTPGYIATATRMVLKPRETPQSISVITRQHMDDFALDNVDDVMRHTPGITVSAYDT DRTNYYSRGFSINNFQYDGIPSAVRNVAYSAGNTLSDMAIYDRIEVLKGASGLLSGAGSLGGTINLVRKKPTHDFHGHITTGAGSWDNYRTEADVSGPLT DSGNVRGRAVAAYQDRQSYIDRYSNQSSVFYGILEADLTPDTLLTVGADYQDNRPQGSTWSGSFPLYNYAGEINDAKRSFSNATDWSSWQQYTRTVFATL EQDLGGGWVGKLQLDHKLNGYDAQLGAIQFNQPAADGTATINAQRYKGETTSDAADLYISGPYSMMGREHQLVLGGSISKANWQGKGFWDVKFSTPNLVD YFNWNGHLAKPDWGRASQISDDTVRQTGMYGTTRLSITDDLNVFLGARVVDYTLTGTTTTYHESGRVIPYAGITYDLTDSLTAYASYTDVFMPQEFYNLD RHSKMLDPDQGENYEIGLKSEMFDGRLNASLAYFEIKESNRPIPDDAWNNLSPTPPNYAFKGTAARTKGYELEISGELSPGWSLQGGYTHKVVRDDTGKK ISTFEPEDQLSFYTIYKLKGDLSKVSVGGGARWQSTAWQEMYNGPKNRYEDFSQKPYWLVDLMTRYQFTENLSTTLNVNNVFDKYYYTNIGFYNSAIYGE PRNFMVTTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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