Pseudomonas lundensis DSM 6252, TU74_RS21455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 40_32015_26.2486, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACAGGCACGAATTCCGTGGTGTTGAACACAAATGCGGCCAGCGCCAGTGCGATGACCGGTTGCCAATTGGCAGAGGGTGTAACGTTGGGAGTGTTCATTT AAAGGATGTATGACTCGCTATCGAAGGTCTGACAAGGCCCTGACTCGGGCGCCCCGGCACGTACGTTTTGCATACACAACACGTGCCATGCACGCGATTG CGGCCCGAAGCAAAACAGGGCGGCATTCTATAGGCTTCTCACAGCGCCGTTCGTGCACTTGGATCCGGGCGGCGAGGCATTTTGTCACACTACACCTGTT GCAGTTGCATCGTTTCAGCGGATTACGGCGCCATCCATCCCGTGCAGGAAGTGCCGGATTCAATGCCCCGGAGATGCTACCCTGCGCGCCTCAAAGATCT GGCCATCAGCCAGACACCTATCGACCTGTGCACACACACGCAGGCTGGCGTCTTCGCGAGCCTGTGCGTGCGCGCCAGGGCGGGACGTTCAGGAGTTTTC
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| DNA Sequence for Gene |
>TU74_RS21455
ATGGGTAAGCCTTTGCCGCGTTTTGCGTTCACGACCTTGAGTGTCAGCCTGCTGCTTGCCAGCGCTTTTCAGACGGCGCAGGCCAGCCAAACCGAGCTGC CCGCCATTTCAGTCACCGGCGAAGACAGCCTCGGGTATCAGGCAGACACCGCGTCGGTGGGCGAGTTTGACGCGGCGCCCTTGCTGGACACCCCGGCGGC TGTTTCGGTCTTCACCCAAGCGCTGATTCAGGATCAACAGGCACGCCTGCTCAGCGATGTGTTGAAAAATGATGCCTCCGTGGGCGAAAGCTACGCCCCC ATCGGTTACTACCAGAACTTCGTGGTGCGCGGTTTCTCCCTGAACGCGGCCAGCAGCTACGCGATCAATGGGCGCACCATCACCGGCGAGCAAAACGTCG GCCTTGAAAACAAGCAGCAAGTGGAATTGCTCAAGGGCCTGTCTGGCCTGCAAAGCGGAGTGTCGGAGCCTGGCGGGCGGGTCAACTACGTGACCAAGCG CGCCGCCGATGTGCGCTCGGTGACGGTGTCCACCGACGACCGTGGCAGCGGCTACATTGCCACCGACGTCGGCGGTTGGTTCGGCAGCGAACAACAATTT GGCTTGCGGGCCAATGTGGCCCATGAAGACATTCATTCTTACGTTGAACACGCCAACGGCCAGCGTGATTTCATGTCCCTGGCGTTCGACTGGAACATCA GCCCCGATGCGCTCTTACAACTGGATGTCGAGTACCAGACCCAGGAACAGCGCTCGGTGCCCGGCTACCAACTGCTGGGCGGCACCGAACTGCCCCACGG CGCGTCCCCCAAAAAACTGCTCGGCCATCAAAGCGGCTCCAAGCCCGTGACCCTCGACTCATTGAACCTCAATGGCCGTTTTGAGTACCGCTTCAGTGAC AACTGGAAAGGCAACCTCAGTGCGTCGCGCAGCAAAGTGGTGATCGATGACTACAGCGCCTTTGCCTGGGGCGGTTGTTCGCAAGGGACGGCGTGTTCGC AAGGCAACTATTTCACCCCGGCAGGCGGCTACGACATTTACGACTTCCGCAGCCCCGACGACACCCGGCGCAATGACGAAGCCCAGGCCACCCTGAGCGG CGCCTTCAACACCGGGGCATTAGGCCATGAGCTGACAGTGGGCAGCAGCGCATTGCGGCGCGTCGTTAATAATCGCGAGCAAATCATGGAATGGGTCGGC AGCGGCAACATCGATGCCGAACCTGAGCAGTTCCCCCGCTACACCGGCGCCCTGAACGACAGCCACCGTCGTCTCGACAGCCGCCAGTACGGGGTGTTTT TCAACGACCGTATCCGTTTCAATGAACAGTGGCACACCGTACTGGGCGCGCGCGAAGTGCGTCTGGACGAAAAGGCCTTCGACAGCACCGGCGTCACCAC CCGCCACACCCAACGCTATGCGTTCTTGCCACAGGCAGCGTTGATCTATAAACCGCTGAATAACCTGTCGCTGTACACCCGTTACAGCAAAGGCTTGTCG CTGGGCGGCACGGCGCCCTGGTTTGCCACCAATGCTTTCGACATCCTGCCCCCCAGCGTGTCGCGGCAAATCGAAGCTGGGATCAAGTACGACTGGCAAC GCCTGAGCCTCAGCGCGACGCTGTTTCAGTTGCGCCAGGGGTACCAGTACGCGCAACCGGACGGCGCCGGGAAGTTCACCTACGTGCAACAGGGCGAGCA AAAAAATACTGGGCTGGAGCTGGCAGCCAATGGCCACGTGACTCCGCGTTTACAGGTGGCTGCCAGTGTCGCGGCGATCCGCGCGCGGGTGTCGGGCAGC GGCACCCCGGCCTACGAAGGGCACCAAACCCTTAACGTCCCCACCCTGCGTGCCAGCCTGTATGGCGACTACGCCCTGCCCTGGGTCGATGGCCTGGCAT TGCTCGGCGGTGTGCAGTACAGCGGTAAAAAATACGCCAACCCACAAGGCAACGTGGAGGCCGCCAGCTATGCGGTGTTCAACATCGGGAGCCGCTACAG CACCCGTATCGACGGTTACGACACCGTGTTCCGGCTGACCGTCGACAACCTGTTCGACACGCGTTACTGGCGCGACGTGGGTGATTACATGGGCGACAAC TATGTGTTCCAGGGCGCACCGCTGACTGCCCGTTTGAGTGCTTCGGTCAACTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCAAATTAGCCCCGTTATTGGCCACTCAACCGGCATCGCCCGCGAACATCTATCTACCGCGTGCCTTGAGTCAAAACCTCTTACGGTCATGTTTCGAAC ATTGACGGTAAGAGGCTGACTGTGAACCCCACCACTGAACAAACCCTAGAGCGCATCACGCTGTATGAGCTCGCCGATAACATCGGTCTGATGTATGTGA ACCGCAGTGAGCCCGTGGCGGCCTCATTGGCTATCGAGCTGATCAGCCATGTACTGGCGCAGCTGGGCACACACACGCTCACCGATGAGCAGTGCGCAAG CCCGTCTTTCCTGCTGATGCTGGCGACCCAAGGGGCAGTTAAAGCCTCCGTGGCCACCTTGTTGGCCGTGCCACAGGGCACGGTTACCCATAACGATGTC AGCGCATTGCTGTTAAAACTGGCCAATCAGGTCTGGGCCTTCCATGCCGGGCATATTAACTACCCTGGAACACAGCCCGGCCCCGCGCAACGCGCTCAGT
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| Amino Acid Sequence |
>TonB-dependent receptor
MGKPLPRFAFTTLSVSLLLASAFQTAQASQTELPAISVTGEDSLGYQADTASVGEFDAAPLLDTPAAVSVFTQALIQDQQARLLSDVLKNDASVGESYAP IGYYQNFVVRGFSLNAASSYAINGRTITGEQNVGLENKQQVELLKGLSGLQSGVSEPGGRVNYVTKRAADVRSVTVSTDDRGSGYIATDVGGWFGSEQQF GLRANVAHEDIHSYVEHANGQRDFMSLAFDWNISPDALLQLDVEYQTQEQRSVPGYQLLGGTELPHGASPKKLLGHQSGSKPVTLDSLNLNGRFEYRFSD NWKGNLSASRSKVVIDDYSAFAWGGCSQGTACSQGNYFTPAGGYDIYDFRSPDDTRRNDEAQATLSGAFNTGALGHELTVGSSALRRVVNNREQIMEWVG SGNIDAEPEQFPRYTGALNDSHRRLDSRQYGVFFNDRIRFNEQWHTVLGAREVRLDEKAFDSTGVTTRHTQRYAFLPQAALIYKPLNNLSLYTRYSKGLS LGGTAPWFATNAFDILPPSVSRQIEAGIKYDWQRLSLSATLFQLRQGYQYAQPDGAGKFTYVQQGEQKNTGLELAANGHVTPRLQVAASVAAIRARVSGS GTPAYEGHQTLNVPTLRASLYGDYALPWVDGLALLGGVQYSGKKYANPQGNVEAASYAVFNIGSRYSTRIDGYDTVFRLTVDNLFDTRYWRDVGDYMGDN YVFQGAPLTARLSASVNF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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