Pseudomonas lundensis DSM 6252, TU74_RS03665
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 3_281757_34.5556, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCTAAAGGGCTCTTCCCAAAACCCCTGTAAGGCCGTTACATTGGCGCTTACAGACGGTTTTGGGAGAGCGCTCGAAAAATCAGCGCTTCCCTAATGG CTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAAGAC TGTCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTGTCTACCAAGCGTGCCCGCCAACTGGCCACCGGTGGTAAAGAGCCGCTGGTTCAGTGGG AAAACGACAAGCCTACTGTTGTAGCCCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTTATCGCCAACGCTGAAATCGTCGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCGAACTAAGCCTATGCCCGGTCGACGTAGCACGGCGAAGGGTACACAGTTTTGGCAGGAGGCTTACTC
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| DNA Sequence for Gene |
>TU74_RS03665
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTGTCGGCGTACCTCGGCCCGGACCAGGTCAATCTGGTCCGCCGAGCGTACTACTACGCAGAACAAGCCC ACGACGGCCAACGCCGCCGTAGCGGCGAACCGTATGTCACGCATCCGCTGGCAGTCGCGAATATCCTTGCCGACATGCACATGGATCATCAAAGCCTGAT GGCGGCGATGCTGCATGACGTCATCGAAGACACCGGTATTGCCAAAGAGGCGCTCGTCGCGCAGTTCGGCGAAACCGTGGCAGAACTGGTTGATGGTGTC AGCAAGCTGACCCAGATGAACTTCGAAACCAAAGCCGAAGCCCAAGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGGGACATTCGCGTGATTC TGGTCAAACTGGCTGACCGTCTGCACAACATGCGTACCCTCGAAGTGTTGTCCGGCGAGAAACGCCGGCGGATTGCCAAGGAAACCCTGGAAATCTACGC ACCCATTGCCAACCGGCTGGGCATGCACAACATTCGAATCGAATTCGAAGACCTCGGTTTCAAGGCGATGTACCCGATGCGTTCGGCGCGCATCTATCAG GCCGTCAAGCGTGCCCGGGGCAATCGCAAGGAAATCGTCAACAAGATCGAAGAGTCGCTGAGCCACTGCCTGGCCGTTGACGGCATTCAGGGCGAAGTCA GTGGTCGCCAGAAACACATCTACGGCATCTACAAGAAGATGCGCGGCAAGCGTCGGGCGTTCAACGAGATCATGGACGTTTACGCGTTCCGCATCATCGT TGATAAGGTCGATACCTGTTATCGCGTGTTGGGCGCTGTACATAATTTGTACAAGCCGCTGCCGGGGCGCTTCAAAGATTACATTGCCATTCCCAAAGCC AACGGCTATCAGTCGCTGCATACCACGCTGTTCGGCATGCATGGTGTACCGATCGAGATCCAGATCCGTACCCGTGAAATGGAAGAAATGGCCAACAACG GTATTGCCGCCCACTGGTTGTACAAATCCAGTGGCGACGAGCAACACACCGGCACCCATGCCCGTGCACGGCAATGGGTCAAAGGCGTGCTTGAAATGCA ACAGCGCGCAGGCAACTCCCTCGAATTCATTGAAAGCGTGAAAATCGACCTGTTCCCGGACGAGGTTTACGTATTCACCCCCAAAGGCCGGATCATGGAG CTGCCAAAAGGCTCCACGGCGGTCGACTTTGCGTATGCGGTACACACTGACGTGGGCAACAGTTGCATTGCCTGTCGGATCAACCGTCGTCTTGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCTACGGTCGAGATTGTCAGTGCCCCCGGCGCCCGCCCGAATCCGGCGTGGCTTAATTTTGTGGTGACAGGCAAAGC CCGCACCCACATCCGTCACGCCCTCAAGTTGCAGCGTCGTTCCGAGTCGGTGAACCTCGGCGAGCGGCTGCTCAACAAGGTGCTCAACGGGTTCAACAGC TCGCTGGACAAAATCCCGGCCGAGCGTGTGCAGGCGATGCTCAACGAATATCGCCTGGAACAGATCGAAGACTTGCTCGAAGACATCGGTCTGGGCAATC GCATGGCTTACGTCGTCGCCCGCCGCCTGATGGGCGAAGGTGAGCAGTTGCCAAGCCCGGAAGGGCCACTGGCCATCCGTGGCACCGAGGGGTTGGTGCT CAGCTACGCCAAGTGCTGTACGCCTATTCCGGGCGACCCGATCGTGGGTCATTTGTCCGCGGGCAAAGGCATGGTTGTGCACTTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCACAACCCTGAGAAGTGCATCCAGTTGGCATGGGCCAAGGATGTAACGGGCGAATTCAACGTCGAATTGCGCGTCGAGCTGGAGC ACCAGCGCGGTTTGATCGCGCTGCTGGCCAGTAGCGTGAACGCCGCCGACGGCAACATTGAAAAGATCAGCATGGACGAACGCGATGGTCGAATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGATCGCGTGCACCTGGCTCGCGTGATCAAAAAACTGCGTGCCCTTACCGGGGTTATCCGCATCACTCGGATGCGT GCATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGTCTACCTGCGGCCATTACAAGGAGTCAATCATGACCAAGACTGTTATCACCAGCGACAAGGCACCTGCGGCCATCGGTACTTATTCCCAGGCGATC AAAGCTGGCAATACCGTCTACATGTCCGGTCAAATCCCGCTGGACCCAAACACCATGGAGCTGGTTGAAGGCTTCGAAGCCCAGACCATCCAAGTGTTTG AAAACCTGAAGTCGGTGGCCGAAGCAGCAGGCGGTTCGTTCAAGGATATCGTCAAGCTGAACATCTTCCTGACTGACTTGAGCCACTTCGCCAAGGTCAA CGAGATCATGGGCACGTACTTCGAACAACCTTACCCGGCTCGTGCAGCCATTGGGGTTGCAGCCCTGCCAAAGGGTTCGCAGGTTGAGATGGATGCCATT CTGGTTATCGAGTAATGCCCCTCGGCGCAGCGTCCTCATGCTGCGCCAACTCCCCCGCTTTTCCCCGTTTTAAAAGGATTCCACCATGCGCAAAGCGCTA
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSAYLGPDQVNLVRRAYYYAEQAHDGQRRRSGEPYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALVAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHNIRIEFEDLGFKAMYPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAVDGIQGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQHTGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESVNLGERLLNKVLNGFNS SLDKIPAERVQAMLNEYRLEQIEDLLEDIGLGNRMAYVVARRLMGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLAWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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