Pseudomonas lundensis DSM 6252, TU74_RS19820
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 31_49550_28.0187, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCTGCACTCTATCAGCCTTGGCGGCGTTTCATGCAACAGCGACCGAGGCTGGAAGCATGGAGCGGCCGTTGACATTCACATGCCCACCCTGGGCGAGG ATGCGCATTACCAAGGCTATATCGCGTGGTGTGAAAAACGTGAACAGGGCTACCGCGTGGGCATTGCCTTCACCGATGCCCAAACACTGTTTGGTGCCCG CATGGGGGAACAGGTGTGCCAGATCGAACACTTTTACCGCTTGCAGCGACTACAAAACCCGCAGGTGGACAACCTGCAAGCGCTGGCACTGGAATGGATC AGCCTGAACGCCGTGGACTTCTCACAAGCCACTCTGGAGCGCGCGCTGGCCCAGCCGGCACTGGATTAAACCTGCGCGTGCCCATTGTCGGATAACCGCT TTACGCGTTAAGGTTCGGCTCCCCGTTGCGCTCAATCATGCTGTGCTCCGCCGCACGGGGATCGCTGGCGGCCAGCACCCGTGACCTGACGAGTAACACG
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| DNA Sequence for Gene |
>TU74_RS19820
ATGGCTGATTTACCGATCGACGACCTAAACGTTGCCTCCAACGAAACCCTGATCACACCCGAACAGCTCAAGCGCGAGATGCCTCTGCGTGAAACTGCTT TGCAGACTGTGACCAAGGGCCGTGAGGTGATTCGCAACATCCTGGATGGCAAAGACCATCGACTGTTCGTTGTCATCGGGCCTTGCTCGATCCACGATAT CAAGGCTGCCCACGAATACGCCGAGCGCCTCAAGGCCCTCGCCGCTGAAGTCAGCGATACGCTGTACCTGGTCATGCGGGTGTACTTTGAAAAGCCCCGC ACCACCGTCGGCTGGAAAGGCCTGATCAACGACCCGTACCTGGATGACTCGTTCAAGATCGAAGACGGTCTGCACATCGGGCGCAAACTGCTGCTGGACC TGGCTGAAATGGGCCTGCCGACCGCAACTGAAGCGCTGGACCCGATCTCCCCGCAGTACCTGCAAGACCTGATCAGCTGGTCGGCCATTGGTGCGCGTAC CACCGAATCGCAAACCCACCGTGAGATGGCTTCGGGCCTGTCTTCGGCCGTCGGCTTCAAGAACGGCACCGATGGCGGCCTGACGGTGGCGATCAACGCG TTGCAGTCGGTTTCCAGCCCGCACCGCTTTTTGGGCATCAACCAGGAAGGCGGTGTCTCGATTGTCACCACCAAAGGCAACGCGTACGGCCACGTCGTGC TGCGCGGCGGCAACGGCAAGCCGAACTACGATTCAGTGAGTGTCGCCTTGTGCGAGCAAGCGCTGAACAAAGCGAACATCCGCCCGAACATCATGGTCGA TTGCAGCCACGCCAACTCCAACAAAGACCCGGCCTTGCAGCCACTGGTCATGGAAAACGTGGCCAACCAGATCGCCGAAGGCAATCAGTCGATTATCGGC CTGATGGTCGAAAGCCATCTGAACTGGGGCTGCCAGGCCATTCCTAAAAACCTCGAAGACTTGCAGTACGGCGTGTCGATTACCGATGCGTGCATCGACT GGGCAAGCACCGAGAGCACCCTGCGCAGCATGCGGACCAAGCTTAAGGATGTACTGCCAAACCGTGCTCGCGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACAGCCACGGTTGAACCTGCAGGAGCGCGCCCGCTCCTGCAGGGGTTTTACAGCGCTACAGCGGAATCGAAGCCCGGCGTTCGCCGCGCTCATACACC ACGTTGGCGCGCCCCACGATCAAAGGATCGAGCGCCCCGATACCTTTCAAATCCTTGTCGGCATACGGCAGCTTGTGCAGCACATAGCGCATGGCGCTCA GCCGCGCGCGTTTCTTGCAATTGGACTTGATCACCGTCCAGGGCGCATCCGAGGTATCGGTGTAGGAGAACATGCCTTCCTTGGCCTTGGTGTAGTCGTC CCACTTGTCCAGCGACGCCAGATCGATCGGGCTGAGTTTCCAGTGCTTGAGCGGATGTTTCTCGCGCTCCTTGAAGCGTCGACGTTGCTCGTCGCGGCTG ACTGAAAACCAGAACTTGATCAGGTGAACGTTACTGCGCACCAGCATGCGCTCGAAATCCGGGGTCTGGCGCATGAACTCAAGGTATTCATCGTCCGAAC
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| Amino Acid Sequence |
>phospho-2-dehydro-3-deoxyheptonate aldolase
MADLPIDDLNVASNETLITPEQLKREMPLRETALQTVTKGREVIRNILDGKDHRLFVVIGPCSIHDIKAAHEYAERLKALAAEVSDTLYLVMRVYFEKPR TTVGWKGLINDPYLDDSFKIEDGLHIGRKLLLDLAEMGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMASGLSSAVGFKNGTDGGLTVAINA LQSVSSPHRFLGINQEGGVSIVTTKGNAYGHVVLRGGNGKPNYDSVSVALCEQALNKANIRPNIMVDCSHANSNKDPALQPLVMENVANQIAEGNQSIIG LMVESHLNWGCQAIPKNLEDLQYGVSITDACIDWASTESTLRSMRTKLKDVLPNRARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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