Pseudomonas lundensis DSM 6252, TU74_RS17750
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 24_85338_31.817, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTCGGCAGCCTGCTGGGCGTTTTGCTGCACCGGGAACAGATCCGGCTCCTGACTCCAGTACCAGCCGAGCCCCAGGCACACCAGCACATACACACCCA CCAGGGTGGCAATGGAGCGGCTCAGCAAGATGCTTTTGAAATAGCCACGCGGCTCTGTCCTGGTCTCCTTGACCGACTCGCGGGCACTGCCCTCACGTTT TTTCCAGTCCAGCATGGCTATATCCTTTCGATTACTGAATTCAACGGTTCGACCACAACCCTAACCCATCGTGCCTTATATGCCTGTTTTTAATCGCCTG ACGGTTGATCTGCAACAAGGCGCTGGCAACAGGCGGCGGCCACTATAAACCACGCTCGCGCCCCTCACAGAAGGATCTCAACGCCTAAATGTAACCGGCC AACGTTAATTTCGTGTGAGGGCTCGTGCATTTCCAAAGAGCTGCTAGCATAGAGCCACTAGTCGAACCTCAGCATGCCCCACTCACGAAGCAGTCTGGAT
|
|
| DNA Sequence for Gene |
>TU74_RS17750
ATGACCGAGCAAGAAGACCCGAACCGCGAGCGCCTCAAGAACCACTTTGCCCAGCGGGTCATCCATCAGGCACGTCAAATTCTTGAGATCTGGCAACGTT TACAGGGCAATGAATGGGCCCCCTCAGACCTCGCGGAACTCAGCGACGCCAACCTGCGCCTGCTGCGGTTTGCCGCACGCTTCGAGCAGCCCGAGCATTC GCAACTGGCCCGCGCCATCAGCCAGGCCTTGCAGCAGGTCGAGGCCAACCGCGGGCGCCTGAGCAGTACGCTGATTACAGAACTCAACCGCCTGATGCAG CGCTTGTCGCGTACCGGTCTGCGCCACGGCGACCAGCTGGATCACACCTTTCTGCCACCGCTGCGCAAGCCGGTGTACATCCTGCTACAGGACCATGACC GGGCCGAGCGACTGGCCAAGCAACTGGAGTTTTTCGGCCTGGGCGCGCAATCGCTGCCCAGCGTGAATGCCTTTCGCAGCGCCATGGCCGAACGCCTACC CTGCGCGATCGTGATGGACGTGGATTTCAGTGGCACCAGCAATGGCCTGCTGCTGGCCGCCGAAGCGCAGGAGGGGCTGGAGCAAAAATTGCCGCTGCTG TTTTTCAGCCTGCATGAAACCGACACCCCCACCCGACTGGCCGCCGTGCGCGCGGGCGGGCAGGAGTTCCTGACCGGCACCCTCGAAGCCTCCAGCCTGA TGGAAAAAATCGAGGTACTGACCTGCGTCGCGCAGTACGAACCGTACAAAGTGCTGATCATTGATGACTCCCGGGCTCAGGCGTTGCACACCGAACGGCT GCTCAACAGCGCCGGGATCGTGACCCGCACCCTGATCGAGCCGATTCAGGCCATGGCCGAACTGGCCGACTTCCAGCCCGACCTGATCATCCTCGACATG TACATGCCCGCCTGCACCGGCACCGAGCTGGCCAAGGTGATCCGCCACAATGATCGCTACGTCAGCGTGCCGATCATTTACCTGTCGGCCGAAGATGACC TGGACAAGCAACTGGACGCCATGAGCGAGGGCGGCGACGACTTCCTGACCAAACCGATCAAGCCCCGGCACCTGATTACCACCGTGCGCAACCGCGCCGC CCGGGCACGGCACTTGAAGGCGCGGATGGTGCGCGACAGCCTGACCGGCCTATACAACCACACGCACATTCTGCAACTGCTCGAAGACTGCACCTTCCGC GCCCGCCGCGAAAGTCGCTCGCTGAGCTTTGCCATGATCGACATTGACCATTTCAAGCGGGTCAACGACTCCTACGGCCACCCCATGGGCGACCGGGTGA TCAAAAGCCTGGCGCTGTTCCTCAAACAGCGTCTGCGCAAGACCGATTTCATCGGGCGCTATGGCGGCGAAGAGTTTGCCATTGTGATGCCTGACACCGA TCAGGAAGCGGCCCACGCGGTGTTGAACACCATCCGCGAGCGCTTCTCGGAGATTCATTACCCGGCCCAACCCACAGATTTATGCTGCACCTTCAGCGCG GGCGTGGTGGAACTCAAAGAGGACACAGACGGCCTGGTCATGGCGTCTCAGGCAGACGAAGCCCTGTACCGCGCCAAGCACAACGGGCGCAACCGGATCG AGCGCTTCCACCCAACAAGGCAAATTGCCACTATTTCAGTCAAATTGCCGAATCCCGTCACATCGCTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCACGTGCAATAACTTCAGCCGCTTCTCATTGCGTCGTAGGCAAAATCCCAGATGCGCCTGAAGCTGCTTACCAACCTCAACACCCTGTTGCTGGTCGC CGTGTGCCTCGCCCTCGGCGCCACCCTGGCGTGGTCGCAACACGCGCTTGAACGGCCGTTTCAACTGATGGAACGCTACTTGAGCCTGTCCCAGCAGTTC CAGAATCAGGTGGCGCGCAATATTGATGATTACCTGGCCAGCGGCGACGCCCTGCGCCTGAGCGATGCCACGACCGCGCTCAACACGCTGAAAAACGAAC TGACCCCGCTCCCGGTTGCGCTGGCCGAGGCCTTGCGCCCCAGCCTCGAACGCCTGAGCACGTACAGTGGCAACGAACTGCTGGCCGCTGGCAAACTGGC CGGTGACCCGCAAGCGTTGCTGTTGCAGGCCGAACGGGAGCTGGGCGCCACTCTGGAGCAACTCAGCCAGTATGCCAATCAAGCCAGCGGCCCCGACGCC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MTEQEDPNRERLKNHFAQRVIHQARQILEIWQRLQGNEWAPSDLAELSDANLRLLRFAARFEQPEHSQLARAISQALQQVEANRGRLSSTLITELNRLMQ RLSRTGLRHGDQLDHTFLPPLRKPVYILLQDHDRAERLAKQLEFFGLGAQSLPSVNAFRSAMAERLPCAIVMDVDFSGTSNGLLLAAEAQEGLEQKLPLL FFSLHETDTPTRLAAVRAGGQEFLTGTLEASSLMEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCTFR ARRESRSLSFAMIDIDHFKRVNDSYGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPDTDQEAAHAVLNTIRERFSEIHYPAQPTDLCCTFSA GVVELKEDTDGLVMASQADEALYRAKHNGRNRIERFHPTRQIATISVKLPNPVTSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|