Pseudomonas lundensis DSM 6252, TU74_RS16745
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 22_92489_31.8551, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGACGGGCAAAACATTCGCTTGCCGGGCTACATCGTGCCCCTTGAGGTCAACGAGGAAGGCCGCACCACGGAGTTTTTGCTGGTGCCGTATTTCGGCGC CTGCATCCATGTCCCGCCACCGCCCTCGAATCAGATCGTACACGTGACCAGTCACGTCGGGGTCAAACTGGACGAGCTGTACCAGCCGTACTGGATCGAA GGCGCATTGCAGGTCAAGCCGAGCAGCAGTGAGCTGGCCGATGCGGGGTATCAGATGGACGCGCAGAAAATCTACGTTTACGAGTTGCCGGAGTAACCGC CGGGGCCACGCTGCCCCGGCGTCTGAGCCGCCTGATGGCAGGCCACGGCCGCGAGTAAAGAGTCCGTGTTTGCGGGTTAGTTCACGAAATTTTCACAATT TTTCAGCGCATCGCCGTTTCATTGAGCTGGGTCAACAGAGTGGCTCGGAGCGCTCATTACCATTGGTTATATAAATTTTAAATATCCAATTGGAGCTCCC
|
|
| DNA Sequence for Gene |
>TU74_RS16745
ATGCACAAGTCTTTGCTCAGCGCAGCGGCACTTGCCCTTGCCGTCGTTGCCCCGCTTGCTCACGCGCACACTGAAGGCGACATCATCGTCCGCGCCGGTG CCATTACGGTTAACCCGAAAGCCGACAGCTCCAGTGTAAAAGTGGACCAGGGTCCGCTGGCTGGTCGCGATCTGGGCGGCAAGGCAACTATGAGCAGCGA CACCCAATTGGGTCTCAACTTTGCTTACATGGTCACCAACAACATCGGTATCGAGTTGCTGGCCGCTACCCCGTTTGAACACGACGTCAAAATCAAAGGC ACTGCCCTTGATCCGGCCAATGGCAAACTGGGTTCGCTCAAACACTTGCCGCCCACTCTGAGCGTCGTGTACTACCCGCTGGACTCCAAGTCCGCGTTCC AACCGTACGTGGGTGCCGGTATCAACTACACCTGGATTTACGACGAGCACGTGGGCAGCCGCGCCAACGCGGCGGGCTTCGATAACTTCAAAGCGAAAAA CTCGTGGGGCATGGCCTGGCAGATCGGTGCCGACTACATGCTGACCGACAACATCATGATCAACGCCCAGGCGCGCTACATCGACATCGATACCCGCGCG ACCGTGGAAAACAACGGTGTTGCGCCTGGCACTCGTGCCAAGGTCAACGTTGACGTCGATCCATGGGTTTACATGGTGGGCTTGGGTTACAAGTTCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAATAGCCGAACCTAAAAAGGCGCCTTTCGAGGCGCCTTTTTCATGTGCAGCGTTTACTAGCGACCCAACAAACGCGCCAGGCCTTCACTCATCGGTGT GGTATCGCCCAGCGTGAAACGCTGTAACAGGCGGCTGTTATCGGCACGCGAATGCCGAATGTCACCGGAGCGCGCCGGGCCATAGCTGATCGGTGGCAGC TCACCGACCACTTCACTCAGGGCGGCCAGCATTTGCTTGAGGGTCGTGGCTTGGTTCAGGCCCACGTTGACCGCGCCTTCTTCCACGTGTTCGGCTTCGA CTGCCTGCACCAGAATCTTCACCAAATCGCCCACATACACGAAGTCGCGGGTTTGTTCGCCATCGCCAAAGATGGTGATGGGCAGGCCTTTTTCAGCACG CTCACTGAAAATGCTGATCACCCCCGAGTACGGGGAAGACGGGTCCTGACGCGGCCCGAAAATGTTGAAGAAGCGGAAAATCACGGGCTCCAGACCGTGC
|
|
| Amino Acid Sequence |
>membrane protein
MHKSLLSAAALALAVVAPLAHAHTEGDIIVRAGAITVNPKADSSSVKVDQGPLAGRDLGGKATMSSDTQLGLNFAYMVTNNIGIELLAATPFEHDVKIKG TALDPANGKLGSLKHLPPTLSVVYYPLDSKSAFQPYVGAGINYTWIYDEHVGSRANAAGFDNFKAKNSWGMAWQIGADYMLTDNIMINAQARYIDIDTRA TVENNGVAPGTRAKVNVDVDPWVYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|