Pseudomonas lundensis DSM 6252, TU74_RS16625

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas lundensis strain DSM 6252 22_92489_31.8551, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCCGATGAGCAGACACGGGCCTGGTTCGTCACGCACGTCATGCCGCATGTGCAAGACGACGTCCCGCAAAGCGAGGCCCCCGGCGCTGAACAACCCGCGT GGGAGCTGGCCCTTGAGCACGCGCAAGAGGTGGCGCTTTCCCAGGGCTTCAAACCCGCCGTTCAATCACTCAAAAGTGGCCTGGCCCAAGCCCAGGGCGG GCGCGTGCGTTTTTTCTGGCAGTTGGCGCTGGCACGGCTGTGCTTAGCAAACCGCAAATACGAAATCGCTCAGACCCAGCTCGACATGCTCGACCAACTG CTTCAGCGCTCCGGTTTGCAGGCCTGGGAGCCCGATCTTGTGTTGGAGGTGCTCAGCCTTTGGCGCCGTTGTTGCGAGCTGTTGCCGCAGAGTCATGACG TGCGCGAACGCAAGGATGAGTTGTACCGCAGGTTGTGCCACCTCGACCTTGAAGTGGTACTTGAATAGGCCTTTGGGCCATACGCATAAGGGAAAACATC
DNA Sequence for Gene
>TU74_RS16625
ATGGCCAAAGAAGGCTCGGTTGCACCTAAAGAACGTATCAACATCACGTTCAAACCCGCGACGGGCGGGGCTCAGGAAGAAATTGAACTGCCCCTGAAAT TACTGGTGCTGGGCGACTACGTTCAGCGGTTCGACGCGCGCAAGCTGGAAGACCGCAAACCCATCGCCATCGACAAAATGACGTTCGATGAAGTGCTGGC CAAACAAGGCCTGACCTTGAATCTGAGTGTGCCCAATCGTCTGCAGGACGAGGGTGGCCCTGATGAGCTGGGGATTGCGCTGCGGGTCAATGCGATGAAG GACTTCAACCCTGCAAGCCTCGTTGAGCAAGTGCCCGAGCTGAAAAAACTGATGGAGTTGCGCGAAGCCCTGGTTGCGCTCAAAGGCCCGCTCGGCAATG CGCCCAGTTTCCGCAAGGCAATTGAAGGGGTACTGGCCGATGACCAATCCCGTGCGCGGGTGTTGAGCGAGCTGGACCTGTCCGGTTCCCCCGCCTCGGA CATTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCCCATCAGCAAAGGAAGACCACGTCATGAGTACGCAAGCCGCATCGCAGCAACACGATCAGCAAGCCAATGCCAGCATCCTGGATGGCATCATCGCC CAGACCCGACTGACCCCCCAGGACGACGGCTACAGCGTTGCCAGGCGCGGGGTGGCGGCATTTATTGAAGAACTGCTCAAGCCACAGAACCAGGGCGAGC CGGTCAAGAAAGCCCTGGTTGACCGCATGATTGCCGAGATTGATGCCCGGCTCAGCCAGCAGATGGATGAAATTGTCCACCACCCGGACTTCCAGTCGCT GGAGTCTGCGTGGCGCGGCTTGCAGGTATTGGTGGAGCGCACCAACTTCCGCGAAAACATCAAGATCGAAATCCTCAACGTGTCCAGAGCCGACCTGCTG GACGACTTCGAAGATTCGCCCGAAGTCATGCAATCGGGTTTGTACAAGCACATTTACACCGCTGAATACGGTCAGTTCGGCGGGGAGCCGGTCGGGGCAA
Amino Acid Sequence
>type VI secretion protein
MAKEGSVAPKERINITFKPATGGAQEEIELPLKLLVLGDYVQRFDARKLEDRKPIAIDKMTFDEVLAKQGLTLNLSVPNRLQDEGGPDELGIALRVNAMK DFNPASLVEQVPELKKLMELREALVALKGPLGNAPSFRKAIEGVLADDQSRARVLSELDLSGSPASDI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site