Pseudomonas lundensis DSM 6252, TU74_RS13520
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 15_115582_34.9788, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTATGCCTCAACATCCCTGAATAACTTCAAGCCTGTTGGAAGGGCCTGACCTAAGATTTTTAAAATCTGCGCGGCCTGTTCACTGCTTAATAGCCATCC ACCTTCTGCCATTGCGTTAAGACTTTTATGGCCGAGCGCTTAAACAATTGATCGTTAAAAAGTGGTTGATATCACGTTAAACACTTAATCAAATCATCGT CAGTAGGGTCAGGTATAAAACCACTGATACTCAGGCACATAAGCATTTCTGTATGACTGCTGTTTGATCGATTTTCCGTTTTATACACCCGTGGGGGCGC CATGCTCACCTACGTGTTTACCTTGCTTGTCGCAGACCTCAACGGCTCCATGCTGGTTGATAGTCCCCTTCATAACGCGCTTCATTCAGCCTTCATACAG AAATTTCACCTGATGTGATCCATGCTCTGGGTATGATTTGGGCCATGTGCTATTGCTCTATGGTCTCTCATTACTCATTCACATCGGACGTCACGCCTTT
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| DNA Sequence for Gene |
>TU74_RS13520
ATGAGCTCGCTGCCCTTCTTGCCGTTTTCCAAACCAACCATCGATGAAGCCACCATTGCTGCCGTGGGCGACGTGTTGCGCTCGGGCTGGATCACCAGCG GGCCAAAGGTTCAGGCATTCGAGGCGCAATTGTCCGAGTACGTGGGCGGTCGCCCGGTGCGCACGTTCAACTCCGGCACGTGCACCATGGAAATCGCCCT GCGCATCGCAGGGATCGGTGCAGGTGACGAAGTCATCACGACGCCGATCTCATGGGTCGCGACTGCCAATGTGATTCTCGAGGTCGGCGCTACGCCGGTG TTTGCCGATATTGATCCGATCACCCGCAATATTGACCTGAAGAAAGCCGAAGCCGCGATTACGCCACGCACCAAAGCCATCATTGCGGTTTACCTCTCCG GCCTGCCGGTGGACATGGACGCCCTTTACGCTCTGGCCAAAAAACATAACCTGCGCGTGGTCGAAGACGCCGCTCAGGCCCTAGGCGCGAGCTGGAACGG GCAGCGCATCGGCGCACGCGGGGATTTCGTGTCGTTCAGTTTCCAGGCCAACAAGAACATCACCTCGTCCGAGGGCGGGTGTTTGGTGCTCAATAACGAA GAAGAAGCGCGGCTGGCTGAGAAATACCGCCTGCAAGGCGTCACCCGTACCGGATTCGATGGCCTGGATGTCGACGTTCTGGGCGGCAAGTTCAACATGA CTGACATTGCGGCTGCCATCGGTCTCGGGCAGTTCGCCCATATCGAGACGATTACCGCGCACCGCCGTGAATTGGCCAGGCATTATTTCGAGTGTTTCGG CCCTGGTTTTGAAGCCGAATACGGCGCGCAATTGCCTGTGGCTGATTTCAGCACTACCAATTGGCACTTGTTCCAGCTAGTGCTGCCTGAGCGCAAGGAC GGCCAACCGGCACGGGCTACGTTCATGAAAGATATGCAGGCATTGGGCGTGGGCGTGGGCTATCACTACCCGCCCATTCACTTGCTGAGCCTGTATCGCG CGCAAGGTTTCAAAGAAGGGATGTTCCCCGTCGCAGAACGCGTAGGGCGGCTGATTGTGTCATTGCCGATGTTCACGGCGATGACCAAAGCCGATGTGGA GCGGTCGGTTAAAGCCGTCAAGGCCGTGTTGCTGAACGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGATTTCGCTGCCGGTAGAGAGGTCTACCGGCAGCGACCGTCCCGCCGTGGCTTACTCGCCAATGGCGGCTTTGTAGCCAGCGGCATCCAGCAGTTTGT CCAGCTCAGCGGTGTTGCTTGGCTTGAGCTTGAAGATCCAGCTCGCGTAAGGATCGCTGTTCAGGCTTTCAGGGCTGTCGGCCAGCGTCTCATTGACCTC GATCACTTCACCGGACACTGGCGCATAGATGTCCGAGGCGGCTTTTACCGACTCCACGACGCCTGCAGTGTCGCCTGCGGCAAACACTTTGCCCACTTCG GCCAACTCAACGAACACCACATCCCCCAACGCTTCCTGAGCGTGCTCACTGATACCCACAGTGACAGTGCCGTCCGCTTCCAGACGGGCCCACTCGTGAC TTTCGGCAAAGCGCAGCTCAGCGGGGATATTGCTCATATTCAGTGTCCTCAATAAGAAATGTCAGCCGCTTGCACACAGCGCAAGCCTGCCGGTAAACGT
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| Amino Acid Sequence |
>aminotransferase DegT
MSSLPFLPFSKPTIDEATIAAVGDVLRSGWITSGPKVQAFEAQLSEYVGGRPVRTFNSGTCTMEIALRIAGIGAGDEVITTPISWVATANVILEVGATPV FADIDPITRNIDLKKAEAAITPRTKAIIAVYLSGLPVDMDALYALAKKHNLRVVEDAAQALGASWNGQRIGARGDFVSFSFQANKNITSSEGGCLVLNNE EEARLAEKYRLQGVTRTGFDGLDVDVLGGKFNMTDIAAAIGLGQFAHIETITAHRRELARHYFECFGPGFEAEYGAQLPVADFSTTNWHLFQLVLPERKD GQPARATFMKDMQALGVGVGYHYPPIHLLSLYRAQGFKEGMFPVAERVGRLIVSLPMFTAMTKADVERSVKAVKAVLLNA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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