Pseudomonas lundensis DSM 6252, TU74_RS13390
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 15_115582_34.9788, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGAAAAACTGATCCCGCTTGTGATTCTTAATGCCCTGGCGGGCAAACCACTGCCGGTCTACGGCAATGGCCTGCAAGTGCGTGACTGGCTGTTCGTGG AAGACCATGCCCGCGCCCTGCTTAAAGTCGTGACCGAAGGCGTGGTGGGCGAGACCTACAACATTGGCGGCCACAACGAACAAAAGAACATCGACGTGGT GCGCGGCATCTGCGCCCTGCTTGAAGAACTGGCGCCACAGCGCCCGGCGGGCGTGGCGCAATTCGCTGACCTGATTACCTTTGTCAAAGACCGTCCGGGC CACGACCAGCGCTACGCCATCGACGCCAGTAAGATCGAACGCGAGCTGGGCTGGGTGCCGGAAGAAACCTTCGAGACCGGCCTGCGCAAAACCGTGCAGT GGTACCTGGACAACCTTGAGTGGTGCCAGCGCGTTCAGGACGGCAGTTATCAGGGCGAGCGTCTAGGCTCTACAGAACCCAAAGACCTGATTGCATGACC
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| DNA Sequence for Gene |
>TU74_RS13390
GTGGGCTCGCCTGAATTGAAAATACTGATTAGCGGTAAAACCGGCCAAGTGGCCATGGAACTGCAAAAACGTCTGGCTGATATGGGCGAGCTGATTGTGC TGGGACGCGATGAGCTGGACCTGAGCCAGCCCGAGCAAATACGTGCGCAGGTGCGGGCCCACGCACCCGACCTGATCATCAACGCGGCCGCCTACACGGC CGTGGATCAGGCCGAAAGCGACGTTGATGCCGCCAATGCGATCAACGCCACTGCACCCGGCATCTTCGCTGAAGAAGCCAAGGCACTGGGCATCCCGCTG ATTCATTACTCCACCGACTACGTGTTCGATGGCAGTAAAGAAACGCCCTACACCGAAGACGACATCACCCACCCGCTGAGCGTCTACGGCCACAGTAAAG CGTTGGGCGAAAAAGCCATCGCGGCGACGGGCTGCCAGCACCTGATACTGCGCACCAGTTGGGTGTATTCCTCCCACGGTAAAAACTTCCTGCTGACCAT GCAGCGCTTGCTGCAAGAAAAGCCGGAACTGCGCATCGTGGCCGACCAGATCGGCGCGCCTACGTGGGCGGGCACCATTGCCCAGAGCACGCGCACATTA ATTGAGCGCTGGCAAACAGGCCACACCGGCCCCTGGGGCGTTTATCACCTCACGGCCCATGGCCAAACCTCATGGTTCGGGTTTGCCCAGGCCATCGGCG AACAGCTGATTGCCTTGGGCAAGCCGTGCGCCGTGCTCGAAGCCATCCCTTCGAGCGACTACCCAACCCCCGCCAAACGCCCGCTTAATTCACGACTGGA TTGCAGTCGGTTAACGGCCGACTGGGGCGTCACTCAGCCCGACTGGCACACGGCGTTGCGCACGTGCATGGCCGAGCAAGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATCGGGCGCGGATGGCTAAAATCCGCAGGTATACTGCGCCGTACTTTTGCGGCGTAGTTTCAACATGATCAAAACCCCTCCCGTGCCTCGCAGACCCC GCTGGCGCAGCCTCGCCTTGCTGGCCTTGTGCCTGGCGCCCTTGTTGTGGCCGTTGCAGCATCTGGCCGAGCGCTATTACCGCAGCGAGCTGGCCGGGCA AAATCGCCAGACCCTGGATCTCTACGTCGCCAACCTGCTGGGCACGCTGCATCGCTATGAAGTGCTGCCGCAGATCCTCGGCGAACTGCCAGCCCTGCGC GCGTTGCTGGCAGACCCGGAAAACCCGCAAATCCTCAGCCACGCCAACCAGTTGCTCAATGACATCAGCACCCAGACGGGCGCCGAGGTGATGTACCTGA TGGATGCCCACGGCGACACCCTCGCCGCCTCCAACTGGGACAAACAGGACAGCTTTATCGGCCGCAACTTCGCCTTTCGCCCGTATTTCAGCGAAGCGAT
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| Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase
MGSPELKILISGKTGQVAMELQKRLADMGELIVLGRDELDLSQPEQIRAQVRAHAPDLIINAAAYTAVDQAESDVDAANAINATAPGIFAEEAKALGIPL IHYSTDYVFDGSKETPYTEDDITHPLSVYGHSKALGEKAIAATGCQHLILRTSWVYSSHGKNFLLTMQRLLQEKPELRIVADQIGAPTWAGTIAQSTRTL IERWQTGHTGPWGVYHLTAHGQTSWFGFAQAIGEQLIALGKPCAVLEAIPSSDYPTPAKRPLNSRLDCSRLTADWGVTQPDWHTALRTCMAEQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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