Pseudomonas lundensis DSM 6252, TU74_RS11985
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 12_148083_29.7276, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCCGGCCTCAAAGAAAATGTTCGACAGTTTTGGGTCCTGACTGCCCAGCGTCATCATCAAACGGTGCAGGTTCAGTGACGCCTGGCTGTTAATCAGCG TATGAAATCCCCGGCCGATGTTGAGCAGCACCTGCTCGACCGGCACACCCTCAGGCAATGAAAAGAACAGGTCCGGCAGTTGTTCGGAGCAGGTGGCCTT GATCGCGGCCGAGAACAGGTTTTCTTTGTCGGTGAAATGGCTGTAGACCGTCAATTTCGACACGCCGGCGTGGTTGGCGACCGCGTCCATGCTGGTGCTG GCAAATCCTTTGCTCAAAAAAAGACATTTGGCCGCCTCAAGGATCGCATGGCGTTTGGCCATGTCCTTGGGGCGTCCGGCGGCATTGGGCATTAAAGGAT GATCAGACATTTCCGTTTATTACTGGACTGGTGAGTTTGGTATTAATAACATGCCGGCCAGTATAAATATTCCAAGCCCCATAAGCGAAAGGTCGTCTCC
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| DNA Sequence for Gene |
>TU74_RS11985
ATGTTGCGTCATGCCTTGCCCCGCGCTGTGCCTGTCTGTCTGGTGTTTTTGTTAGCTGCGTGCGGGCATGAGGAGCCTGTTCAGGTGAGCATCAGCCCCG CCATCGTGGTGCAACCTCAGCCTTCGGCAGTGGCCACCCAGAGTTATCCCGGCGAAGTCCGTGCCCGCTTTGACCCGCAATTGGCCTTTCGTATTGGCGG CAAGGTCACTAAACGGTGGGTGGATGAAGGCGAGCGGGTCAAGGCCAATCAGTCGCTGGCCGAACTGGACCCCCAAGACGTTCGCCTGCAACTGGAAGCC ACCCGCGCTCAGGTGGCGGCCGCGCAGGCCAATCTGAGCCTGGTGCGTTCGGAGCGCGACCGCTACAAAACCCTCTTGGAGCGGCAGATGGTCAGCCGCT CGCAGTTCGATAACGCAGAAAACCTCTACCGTGCGGGCGAAGCCAAGCTGCAGCAGCTTAAGGCTGAACAGGATGTGGCCAGCAATCAGGCCAGCTACGC CGTGCTACGCGCCCCGCAAGACGGCGTGATTGCCCAGCGCCAGGTGGAAGTCGGGCAAGTCGTGTCGGCCGGTCAGACCGTTTTTTCGTTGGCTGCCGAC GGAGAGCGTGACGTGTTGATCAGCCTGCCTGAGCAGGCGTTCGGCCGTTTCAAGATCGGGCTGCCGGTGTCGGTTGAGCTGTGGTCACAACCCGGTCAGC GTTTCAGCGGGCGGATTCGCGAACTCTCACCCTCGGCTGACCCCAAATCCCGCACCTTTGCCGCGCGCATCGCCTTCACGGCGGGCGAAGTGCCTGCCGA GCTGGGCCAGAGTGCGCGGGTGTTCATTGCGCAGGAGGGGGGGAATGCGTTGTCCGTGCCGCTGTCAGCCTTGAGTGCGGAAAACGGCGCGACGTACGTC TGGCGTGTGGGTCAGGGCAACAAGTTGCAGCAGGTGGCGGTACGGGTCGGCCCGTATGGCCAGAGCAGTGTGCCGGTGCTGGAAGGGCTGACGCCCGCCG ATTGGGTGGTGGCGGCTGGCGTGCATGTGCTGCACGACGGGCAAGAGATCCGGCCGATTGATCGCTCCAACCGAACGATCAATACCGCGGCGAAGGAGTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCATGGGCTTTAACCTGTCTGCGTGGGCATTGCGCAATCGCCAGATCGTGCTGTTTTTAATGTTACTGCTGGCCATCGTTGGCGGGCTTTCCTACAC CAAATTAGGCCAGAGCGAAGACCCGCCATTCACCTTCAAGGCCATGGTCATTCGTACGCTGTGGCCAGGTGCCACGGCAGAAGAAGTGTCACGTCAGGTC ACTGAGCGGATCGAAAAGAAGCTGATGGAAACCGGGGAGTACGAGCGGATCGTGTCGTTCTCGCGCCCCGGTGAGTCGCAAGTGACGTTCATGGCCCGGG ACTCCATGCACTCCAACCAAATCCCCGAGCTGTGGTATCAGGTCCGCAAAAAGATCAGCGACATTCATCACAGTTTGCCGCCGGGGATTCAGGGGCCTTT TTTCAACGACGAATTCGGCACCACATTCGGCAATATCTACAGCCTGAGTGGCGAAGGGTACGACTACGCGGTGCTCAAGGACTACGCCGACCGCATCCAG
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| Amino Acid Sequence |
>RND transporter
MLRHALPRAVPVCLVFLLAACGHEEPVQVSISPAIVVQPQPSAVATQSYPGEVRARFDPQLAFRIGGKVTKRWVDEGERVKANQSLAELDPQDVRLQLEA TRAQVAAAQANLSLVRSERDRYKTLLERQMVSRSQFDNAENLYRAGEAKLQQLKAEQDVASNQASYAVLRAPQDGVIAQRQVEVGQVVSAGQTVFSLAAD GERDVLISLPEQAFGRFKIGLPVSVELWSQPGQRFSGRIRELSPSADPKSRTFAARIAFTAGEVPAELGQSARVFIAQEGGNALSVPLSALSAENGATYV WRVGQGNKLQQVAVRVGPYGQSSVPVLEGLTPADWVVAAGVHVLHDGQEIRPIDRSNRTINTAAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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