Pseudomonas lundensis DSM 6252, TU74_RS11105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lundensis strain DSM 6252 11_151730_29.0616, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAGGTAATGCTTAAGGTGCTGTATGGCTTGAAGAATTTTGAGGGCAAATCGAAATTCAAGACCTGGCTATATAGCATCACCTACAACGAATGCATTACG CAGTATCGGAAGGAACGGCGAAAGCGTCGCTTGATGGACGCATTGAGTATTGACCCCCTTGAGGAAGCGTCTGAAGAAAAGGCGCCGAAACCTGAGGAAA AGGGCGGACTCGATCGCTGGCTGGTGCATGTGAACCCGATCGACCGGGAGATTTTGGTGCTGCGATTTGTCGCAGAACTGGAATTTCAGGAAATCGCGGA CATAATGCATATGGGTTTGAGTGCGACGAAAATGCGCTACAAGCGTGCTCTTGATAAATTGCGTGAGAAATTTGCAGGCATTGCTGAAACTTAGTTCAGC GCAAATAGCTCTACGTGTAGGTAAGTTCTGATAGACTTGCCGCCGAGTTGTCCCCCGGTATGTGGGACTGCTTTACAATCACCAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>TU74_RS11105
ATGAAACTGAAAAACACCTTGGGCATTGCCATTGGTTCCTTTGTAGCCGCAACTTCGTTCGGTGCCCTGGCACAAGGCCAAGGCGCGGTCGAGGGTGAAC TGTTCTACAAAAAACAGTACAACGACAGCGTCAAGCACGTAGAAGACGGTTACAACCCAGGCGCATCGATCGGTTACTTCCTGACCGACGACGTCTCGTT GAACCTGACCTACGACAAGACTAACCACACCCGTTCGAACGACGGCACTGGCAACCAGAAAATCAAAGGCGACAACTTTGGTCTGAACGCTCAGTACCAC TTCGGCACCGTTGGTGACGCTCTGCGTCCTTACGTTTCCGGTGGTGTTGCTCACAAGAGCATGACCAACGTAGAAGCTGACGGCCACAGCGGTCGTGACC AGTCGACTTTCCTGACTGCTGGCGCTGGTGTTAAGTGGTACATCACTGACAACCTGTTTGCCCGTGCAGGCGTTGAAGCTGACTACAAACTGGACAACGG CAAGTGGGACTACGCGCCTACTGTTGGCCTGGGTGTAAACTTCGGCGGCAACGGCGGTAAAGTAGCGCCTGCTCCAGTTCCAGCTCCAGCACCAATCGCT GAGCCAGAACCAGAAGCTCCAATCGCTGAAGTGGTTAAGGTTGAGCTGGACGTTAAGTTCGACTTCGACAAGTCGGTTGTTAAATCGCAGTACATGCCTG ACATCCGCAACGTTGCTGATTTCATGAAGCAGTACCCTGCGACCACCACTACTGTTGCTGGTTACACTGACAGCGTAGGTCCAGACGCCTACAACCAAAA ACTGTCCGAGCGTCGTGCTAACGCCGTTCGTGCAGCTCTGGTTAACGACGGTGTTGAATCCGGTCGCGTAAACGCAGTGGGTTACGGCGAAGCCAACCCA GTTGCTTCGAACGCAACTGAAGAAGGCCGTGCTCTGAACCGTCGCGTAGAAGCTACCGTTCAAGCAGAAGCTAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTTTAGCTAGCCTGTTCAGAAAAGCCCGGCTCAGGCCGGGCTTTTCTTTGTCTGCGATTTAGTCCCGATGTCTCAAGCCGAGCAGGCCTGAAACGGCGT CCCACACTTCCCTCGCGTCTTACCGCTCGGCACGGCTATAATCGCGCTCACTTTCAGCCGCCTTCCGAGACCATCGAGCCCATGTATAACCTGGCCCGCC AGTTGCTCTTCAAACTTTCCCCTGAAACCTCGCATGATCTGTCTCTGGATTTGATCGGAGCGGGCGGCCGTTTGGGGCTGAACAGTTTGCTGTGCAAGGC GCCAGCCAAGCTGCCCGTTAGCGTCATGGGGCTTGAGTTCCCTAATCCGGTAGGGTTGGCCGCAGGCCTGGATAAGAACGGGGCGGCGATTGATGGATTC GCCCAATTGGGGTTCGGGTTTGTGGAGATCGGCACCGTGACGCCGCGCCCTCAGCCCGGTAATCCCAAGCCGCGGATTTTTCGCTTGCCTGAAGCGCAGG
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| Amino Acid Sequence |
>porin
MKLKNTLGIAIGSFVAATSFGALAQGQGAVEGELFYKKQYNDSVKHVEDGYNPGASIGYFLTDDVSLNLTYDKTNHTRSNDGTGNQKIKGDNFGLNAQYH FGTVGDALRPYVSGGVAHKSMTNVEADGHSGRDQSTFLTAGAGVKWYITDNLFARAGVEADYKLDNGKWDYAPTVGLGVNFGGNGGKVAPAPVPAPAPIA EPEPEAPIAEVVKVELDVKFDFDKSVVKSQYMPDIRNVADFMKQYPATTTTVAGYTDSVGPDAYNQKLSERRANAVRAALVNDGVESGRVNAVGYGEANP VASNATEEGRALNRRVEATVQAEAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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