Pseudomonas lini DSM 16768, TU81_RS23545
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 9_294614_17.035, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGACGGTGATGTGGCTGTCGAAGGAAAGGATCCGCCCCTGCAGTTCGGTGGCCTGTTTCATGACCTTGACCGGGTAGCCGGGGTTGTCCTTGAACCCG TAATCCCAGACCAGCCAGCCTGCGCCGGCACTGATCGCCAAGGCCAGTGGCAGGCCGAGGTACAGCGCTTTTTTCGAACGTGTTTTTTTCATCGCCATCT CAGTCAGGTTCGCCGCCCCGGTGCAGGCGCAGGGGCCTTTGCTATCTGGGAAGAACGAGTGACCGATGCAGGAATTTAGGTGGCCGTTGAAAAAATCGCA GGCTGCGCCAACTCCTACATTTGAAATGCGATCCCTTTGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATCTTGATCTTTGGTGGCCCCGAAAAGATCGC AGCCTTCGGCAGCTCCTACAGGGGGCGCATTTAAATTTGTAGAGGCAACAAACGTTCTAGCTTGGATAAAGCCTGCTTCATGGCTGACACAGGTAGGGCA
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| DNA Sequence for Gene |
>TU81_RS23545
ATGACGATTTCTCGACGCTGGTTCATGGCGGGCCTGGCGCTCACGAGCGCTGCGGTGCCTGCCGCTTTTTATGCACATCGTGAGCTGACCCGGGAAAAGG AACCGATCACGCCGGGGGAGGCCACGGTCGACCTCGCCAGCACCGCCGGCCAGCAACTCGCCGACAGCTTGCGCGGAATCTGGGACATTCGTTTTGTCGG CAGCGAGGCCGGGCTTGATGGCTTACCGCAGGACGGGCTGGAGCTGTTTCTCGACATCGCTCATCGCGGGAGAGGGTTGCGCGGTTGCCTGGACACCGGC ACTCACCTGCGCGGGGAAGGCCAGCCGTGCTATCAGGTCATCGGCGATCTGGCGCCGGCCAAGGGCGCCGAACTGTACTGGCGACTGATGCGCACCGACG CCCCGCTGGTGGCGCCGGTGTATGAGTTCAAGGCAAAACTCGACGAGGTTTGGGCCGCTTTCGGCAACGCCGGCAGCGGCACGTTCAGCGGCCAGGTGCT GAGCCTGAATCGCCCATTGGGTTTGCCCGAACTCGACAACCGCTTTATCGCCATCAAGCGTCGGTTTCCGGAAGCGCGGGAGCGAACTGCCCTCAACCCG GCGTTTCTGGCGTGGCTGGTGTCCCCCGAGCATCGGCTGTTTCATCAGCTCTGGCACGCGTCCCGGGACAAATGGCACAAGCTCTCGGAGAAAAAACGCG AGGCGTTGCGCGGTATCGGCTGGCAACCCGGCCCACGGGACAAGGAGCGTGATGCCCGCGGGCCGCGCAAGGACCGAAACGGTTCGGGCATCGATTTCTT CTTCATGCACCGGCACATGCTCGGCATCGCCCGGTCCATGCAGGATTTGCCCTCATGGCCGGCGTTCCCCTTGCCGCAGCCGGAACTCGAGCGTGATCGC CAGGGCTTCGCGCGTTATTTCGACAATCACGATGGCAATGCCTTGCCGCCGACCTGGTTGACCGAAGGCGACGACGAGTACACCAAGTGGGTCAGTGATA TCAAAGCCGCAGAGACCTATCACAGCAACTTCCAGGTCTGGGAGTCGCAATACCGGGATCCGCGTTACCTGTCGAAACTGACCCTCGGCCAGTTCGGCTC GGAGGTCGAGCTGGGCTTGCACGATTGGCTGCACATGCGCTGGGCGTCGGTGGCCCGGGACCCGTCCAACGAGATACCGGTGCCGATGGCCCGGGATCAG GCCGACTTCGCGGCACGCTGGTATGCCCCGGAAAACGATTTTCTCGGCGATCCGTTTTCGTCCCACGTCAACCCGGTGTTCTGGCGTTTTCACGGCTGGA TCGACGATCGCATCGAAGACTGGTTCCGCGCCCATGAGCGTTTTCACCCAGGCGAACTGAGCCGCCTGGAGGTCAACGGTGTGCCGTGGTTTGCGCCGGG GCGTTGGGTGGAAGTGGGCGACCCGTGGCTCGGGCCGGACACCCACGGTTGCAGCACGACCCCGGGCCTGCAATCGGGGCGCTCGGTGGAAATGGACCCC GAAACCATGAAGCTGGCGTTGCGCATTACTTTTGGCGATGAAGACAACATGAGCGAGCTGTTGCGCAAAGTGCCGCGACGGCCTTGGTATGCGCGGCATT TGAAGGTCAAGGGGTGGTCGGTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTAAACCGCGTTATCGTTCTTCGCGAGCAAGCCCGCTCCCACATTTGATCTCCATCGAGCACAAGGTTTGTGTACGACGCAGACCTAATGTGGGAG CGGGCTTGCTCGCGAAGGCGATCTCAAACTCACACTGAGCTAGAGCACCTGCCAGCCCCCACCCAACGCCTTGTACAGCGCAATACTGGCCTGCAACCGC GACAACCTCAGCTGCACATTCATATCCTGGGCGGCATACAGCGTGCGCTGGGTTTGCAGCACCGTGAGCAGGTCTTCGGCGCCGGCCTGGTAGCGACTCT GGGCGATGTCGAAAGCGGTCTGCGCCTGGCTCAGTTCTTCCCCTTGCCACTGACGTTGTTCGTCCAGCCCACGAATGCTGTTGAGGGCTTTTTCCACATC GGCGAAGCCATTGATGATTGCCCCGCGATAGGTTTCCAGCAGTTCCTGTTGGCGCGCCGTGGCTTTGTCGCGGGCGGCGCTGAGGCGACCATTGTTGAAG
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRWFMAGLALTSAAVPAAFYAHRELTREKEPITPGEATVDLASTAGQQLADSLRGIWDIRFVGSEAGLDGLPQDGLELFLDIAHRGRGLRGCLDTG THLRGEGQPCYQVIGDLAPAKGAELYWRLMRTDAPLVAPVYEFKAKLDEVWAAFGNAGSGTFSGQVLSLNRPLGLPELDNRFIAIKRRFPEARERTALNP AFLAWLVSPEHRLFHQLWHASRDKWHKLSEKKREALRGIGWQPGPRDKERDARGPRKDRNGSGIDFFFMHRHMLGIARSMQDLPSWPAFPLPQPELERDR QGFARYFDNHDGNALPPTWLTEGDDEYTKWVSDIKAAETYHSNFQVWESQYRDPRYLSKLTLGQFGSEVELGLHDWLHMRWASVARDPSNEIPVPMARDQ ADFAARWYAPENDFLGDPFSSHVNPVFWRFHGWIDDRIEDWFRAHERFHPGELSRLEVNGVPWFAPGRWVEVGDPWLGPDTHGCSTTPGLQSGRSVEMDP ETMKLALRITFGDEDNMSELLRKVPRRPWYARHLKVKGWSV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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