Pseudomonas lini DSM 16768, TU81_RS23000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 8_312049_22.9628, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTTTGAAACAGTTTCCTGATAAAAGGATTGCCTCATGGCTCTCGACGTTCAAGAAAAAGCTCAAATCGTAGCTGACTACCAGCAAGCTGTTGGTGACAC TGGTTCGCCAGAAGTGCAAGTTGCACTGCTGACCCACAACATCAACAAGCTGCAAGGTCACTTCAAGGCCAACGGTAAAGATCACCACTCCCGTCGTGGC CTGATCCGCATGGTAAACCAGCGCCGTAAGCTGCTGGACTACCTGAAAGGCAAGGATCTGGGTCGTTATCAGACTCTGATCGGTCGCCTGGGTCTGCGTC GCTAATAAGCGATTGCGCTAGAGGTTGGTTGTCTGTCGTGCGTCAGTGGGTTTCCCGCTGGCGCATGGCAGGCTCCCAGCCTCAAGTTTTATCTGGATAC ACGTTTTACCCTGGACAGGTGTTGGGCCGATTCCCGACATTGCCCAAGAATTTCGCAAGAAGACAAGTTCCCCAAGAGCCACAAAAGAAGGTAGGACACC
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| DNA Sequence for Gene |
>TU81_RS23000
GTGAACCCGGTAATCAAAAAATTCCAGTTCGGTCAGTCGACCGTTACCCTCGAGACTGGCCGTATCGCCCGTCAGGCCTCCGGCGCAGTATTGGTCACCG TTGACGACGACGTCAGCGTATTGGTGACCGTCGTTGGTGCCAAACAAGCCGATCCAGGCAAGGGCTTCTTCCCTCTGTCCGTTCACTACCAGGAAAAGAC TTACGCTGCCGGTAAGATCCCTGGCGGTTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAAACCCTGACTTCCCGACTGATCGACCGTCCGATCCGT CCGCTGTTCCCAGAAGGCTTCATGAACGAAGTGCAGGTTGTCTGCACCGTCGTTTCCACCAGCAAGAAGACCGATCCGGACATCGCTGCGATGATCGGTA CCTCGGCTGCCCTGGCCATCTCCGGCATTCCTTTCGATGGCCCGATCGGCGCTGCCCGCGTTGCGTTCCATGAAAGCACCGGTTACCTGCTGAACCCGAC TTACGAGCAACTGAAAGCTTCGAGCCTGGACATGGTCGTTGCCGGTACTTCGGATGCCGTTCTGATGGTTGAATCGGAAGCTAAAGAGCTGACTGAAGAC CAGATGCTGGGCGCGGTACTGTTTGCTCAAGACGAATTCCAGGTTGTGATCAACGCTGTTAAAGAACTGGCTGCCGAAGCTGCCAAGCCGACTTGGGCCT GGGCTCCACAACCAGAAGCTACCGCTCTGCTGGGCGCTATCCGTGCCGAGTTCGGCGACGCGATCTCCCAGGCTTACACCATCACCATCAAGGCCGACCG TTACGCTCGTCTGGGCGAACTGAAAGACCAGGTGGTTGCCAACCTGTCCGGTGAAGAAGGTCAGCCGACTTCCGCTGAAGTCAAAGCTGCTTTCGGCGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTAAACGGCAAGCCGCGTATCGATGGTCGCGACACCAAGACTGTACGTCCGCTGAACATCGAAGTCGGTG TCCTGCCAAAGACTCACGGTTCGGCTCTGTTCACCCGTGGCGAAACCCAGGCTCTTGTTGTTGCCACTCTGGGCACCGCCCGTGACGCACAACTGCTGGA CACCCTGGAAGGCGAGAAAAAAGACCCGTTCATGCTGCACTACAACTTCCCTCCGTTCTCGGTAGGTGAGTGTGGTCGCATGGGTGGCGCTGGTCGTCGT GAAATCGGTCACGGCCGTCTGGCCCGTCGTTCGATTCAGGCCATGCTGCCTGCTGCCGACGTGTTCCCGTACACCATCCGTGTTGTGTCGGAAATCACCG AGTCCAACGGTTCGAGCTCCATGGCTTCGGTCTGCGGCGCTTCCCTGGCGCTGATGGATGCCGGCGTTCCGATGAAGGCACCGGTTGCCGGCATCGCCAT GGGTCTGGTTAAAGAAGGCGAGAAATTCGCCGTCCTGACCGACATCCTGGGTGACGAAGACCACCTCGGCGACATGGACTTCAAAGTAGCGGGTACTGCC AAAGGCGTTACCGCGCTGCAGATGGACATCAAGATCAAAGGCATCACCGAAGAAATCATGGAAATCGCTCTGGGCCAAGCCCTGGAAGCGCGCCAGAACA TCCTCGGTCAGATGAACCAGATCATTGCTCAGTCCCGTACCGAGCTGTCGGAAAACGCTCCGACCATGATCGCGATGAAAATCGACACCGACAAAATCCG TGATGTCATCGGTAAAGGCGGCGCGACCATTCGTGCGATCTGTGAAGAAACCAAGGCTTCGATCGACATCGAAGACGACGGTTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCTGAAGCGGCACGTCAGCGCGTTCTGGGCATCACCGCAGAAGCTGAAATCGGCAAGATCTACGTTGGTAAGGTTGAGCGCATCG TCGACTTCGGCGCATTCGTCAACATCCTGCCGGGCAAGGACGGTCTGGTTCACATCTCGATGCTGAGCGATGCTCGCGTTGAGAAAGTGACCGACATCCT GAAAGAAGGCCAGGAAGTGGAAGTACTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCCATCAAAGACGTAGCAGCAGCCAAGGCTTCGGGC GTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACCCCCTTCGCCTGACCGCTTCAACGTTATAAAAATGCCCCGCCGTGAAAACGGCGGGGCATTTTTTTATGTGCAGAAAGATCAAAAGATCGCAGCCT TCGGCAGCTCCTACACAAGCCCAATGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATTTTGCGGTGCGCCAAGTTGCCGGACCCCGAAGCCAGTGCTAGG TTTAGCCCACAGCCCGTGTAGCTCAGCCGGTAGAGCAGCGCACTCGTAACGCGAAGGTCGCAGGTTCGATTCCTGTCTCGGGCACCATTCTCTTCTTCAT TTCACCTTTCTGCTCAGATCCTCGACGGTGCGCTTGAGTTGATCCATCACGCGATCCTGATCGCTGATCTCCCGTTTGAGACTGGAGATTTCGCTGCTGT TCGAGCTTGAGCTGGAGCCGTTGTTGCGCTTTAGCTCTTCCACTTGCTTGCCAAGGTTGTTCAGATCGCGCTCCTGCTCATTGACCGTGCGCTTGAGATC
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVVAGTSDAVLMVESEAKELTED QMLGAVLFAQDEFQVVINAVKELAAEAAKPTWAWAPQPEATALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVANLSGEEGQPTSAEVKAAFGE IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSIQAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKIKGITEEIMEIALGQALEARQNILGQMNQIIAQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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