Pseudomonas lini DSM 16768, TU81_RS20080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 6_503430_25.999, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCATCGTTCGCGAAGAAATCTTCGGCCCGGTGATGAGCATCCTGACTTACGAAACCGAAGAAGAAGTGATCCGTCGTGCCAACGACACCGAGTTCGGTT TGGCGGCTGGTGTTGTCACCAAGGACCTGAATCGCGCTCACCGTGTGATCCATCAACTGGAAGCCGGTATCTGCTGGATCAACGCCTGGGGCGAGTCCGA CGCCAAGATGCCGGTCGGCGGCTACAAGCAGTCGGGCGTGGGTCGTGAGAACGGCATCAGCTCGCTGAACAACTTCACACGCATCAAATCGGTACAGGTC GAACTGGGCGATTACGCCTCGGTTTTCTAAGGCGGTATTTGCTTCGCCTGCGAGATCGCTATTGCAGGCAAGCCAGCTCCCACAGGTTTGGCGTCGTTCG CCAAATCTGCGGTGCCCCCGATCCCTGTGGGCGCGTGGCTTGCCCGCGATCGAGTGCGAAGCACTCGCCGACCTGACCAACTTCAAAGAGGGTGCATTCA
|
|
| DNA Sequence for Gene |
>TU81_RS20080
ATGTCCCAAGAATTCGATTACATCATCATCGGTGCCGGCTCGGCCGGTAACACCCTGGCGACCCGTCTGACTGAAGACGAAGGCGTCACCGTCCTGCTGC TCGAAGCGGGCGGCCCGGATTACCGTCTGGATTTCCGTACGCAAATGCCGGCCGCCCTGGCGTTCCCGCTGCAAGGTCGTCGCTACAACTGGGCGTACGA AACCGATCCAGAGCCACACATGGACGGTCGCCGGATGGAATGCGGTCGCGGCAAGGGCCTGGGTGGTTCTTCGCTGATCAACGGCATGTGCTACATCCGT GGTAACGCGATGGACTACGACAATTGGTCGAAGCTGCCCGGTCTGGAAGACTGGAGCTACCTCGACTGCCTGCCGTATTTCCGCAAGGCTGAAACCCGTG ACATCGGCCCGAACGACTACCACGGTGGCGACGGTCCGGTCAGCGTGACCACGCCCAAAGCCGGCAACAATCCGTTGTTCCACGCGATGGTTGAAGCCGG TGTGCAAGCCGGTTACCCGCGTACCGAAGACCTGAACGGCTACCAGCAAGAAGGTTTCGGCCCGATGGACCGCACCGTGACGCCGAACGGCCGTCGCGCC AGCACCGCGCGCGGTTACCTGGACGTCGCCAAGAAGCGCTCGACCCTGACCATCGTCACCCATGCCCTGACCGACAAGATCCTGTTCGAAGGCAAGCGTG CGGTCGGCGTGCGTTACCTGATCGGCGCCGCTGAAGAGCGCGTTGAAGCCCGCGCCCGCAAGGAAGTGCTGCTGTGCTCCGGCGCCATCGCGTCGCCGCA GATTCTGCAACGCTCCGGTGTCGGCCCGGCCGAACTGCTGAACAAGCTCGACATTCCGGTGGTCCACGACCTGCCGGGCGTTGGCGAAAACCTGCAGGAT CACCTTGAACTGTACCTGCAATACGCCTGCACCCAACCGGTCTCGCTGTACCCGTCGCTGCTCTTGCACAACCAGCCGGCCATCGGCGCCGAGTGGCTGT TCAACGGCACCGGCATCGGCGCCAGCAACCAGTTCGAGGCCGGTGGTTTCATCCGCACCCGTCCGGAATTCGATTGGCCGAACATTCAGTACCACTTCCT GCCGGTCGCGATTAACTACAACGGCAGCAACGGTGTGAAAGAACACGGCTTCCAGGCGCACATGGGTTCCATGCGTTCGCCAAGCCGCGGTCGCATCCAG GCCAAGTCCAAGGATCCGCGCGAGTACCCGAGCATTCTGTTCAACTACATGGCCACCGAGCAGGACTGGCAGGAATTCCGCGACGGCATCCGCCTGACCC GTGAAATCATGCAGCAGCCAGCGCTGGACGCCTTCCGTGGTCGCGAAATCAGCCCGGGCATCGACGTGCAAACCGACGAGCAGCTGGACAAGTTCATCCG CGAACACGCCGAAACCGCGTTCCACCCGTCCTGCTCGTGCAAGATGGGCACCGACGAGATGGCCGTGGTCGATGGCGAAGGTCGTGTGCACGGTATGCAA GCCCTGCGCGTGGTCGATGCCTCGATCATGCCGATCATCACCACCGGCAACCTGAACGCGCCAACGATCATGATGGCCGAGAAAATCGCCGACAAGATCC GCGGTCGCAAGCCATTGCCGCGTAGCAAGGCCGCCTACTTCGTGGCCGGTGATGCACCGGTGCGCGGCAAGCCGTTGCGGGATGTGAGCCTGACTGCTCA GTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCGTAATACCGAGGCGCGGCCTTCGCGAGCAAGCCCGCTCCCACAGTTGATCTCCGATGTTCACAAAATCTGTGTTCACTACCGATCTAATGTGGGAGC GGGCTTGCTCGCGAAGGGGCCCGACCAAACAACACATAACTTCATGCCATACACCGGGCAACCCCTCCCTACACCGCTCCGCCCTTGATCTACCCCCCGC CCAGGCCTAATCTAGCGCCACGCAAACGCTTCACCCCCTCGCAATACCGATACATCGCAACTCCATACCAAGGAGGTTCCCGAATGTTCGATTTCCACCC CCAGCTCAAGCAGCGCTTTGCTGCGTTGCGCACGGGCGCTGAATTCTTTTCGCTGCGTTATGTGCGCGAGTCCGGCCAGTACCTGTCGGTGCGCAAGAAC GTCGCCGAACCGCCGAGCCTGAGCCGTGACGAAGGCGCGATGCTGACCGTTCGGGTCAACGGTATCGAAGCCTATGCCGCCACCAACGATCTGTCCCAAT
|
|
| Amino Acid Sequence |
>choline dehydrogenase
MSQEFDYIIIGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIR GNAMDYDNWSKLPGLEDWSYLDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPNGRRA STARGYLDVAKKRSTLTIVTHALTDKILFEGKRAVGVRYLIGAAEERVEARARKEVLLCSGAIASPQILQRSGVGPAELLNKLDIPVVHDLPGVGENLQD HLELYLQYACTQPVSLYPSLLLHNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPEFDWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRIQ AKSKDPREYPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDAFRGREISPGIDVQTDEQLDKFIREHAETAFHPSCSCKMGTDEMAVVDGEGRVHGMQ ALRVVDASIMPIITTGNLNAPTIMMAEKIADKIRGRKPLPRSKAAYFVAGDAPVRGKPLRDVSLTAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|