Pseudomonas lini DSM 16768, TU81_RS18795
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 6_503430_25.999, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCGGCCTTCGCCGCCCTTGAGCAGCGTGCCAACGCGTTCCTTCATCTCGCGCGCGGCCTTGTTGGTAAAGGTCATGGCGACAATGTATTGGGCGCGG ATGCCACAGCTCTGGATCAGGTGCGCAATTTTGCGAGTGATCACGCTGGTCTTGCCGGAGCCTGCGCCGGCGAGCACCAAAAGAGGGCCGCCGACGTAGC TCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATACGAAATCAGGGAGTCATTAGCGAAATGGGCCGGCATTTTAACAGGCTCAGCGAATTGTGCTG CTCTCTCCGACTTGTGACCCAACACGCTATCTCTATTTGCCGGTTTTGCTTCTTTCACGCAGGATGCGCAGTGAATTTGCGTCTAATGTTCGTATTCAAT ACGCCAAAGTCGTGTTTGATAACCGATGTCATGTTGTCATTGGTTATCTGCGCGGCATAATGCCCGCCGCCTACATCTTTGCAGAGTCTAGGGAGCTAGC
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| DNA Sequence for Gene |
>TU81_RS18795
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCGAAGAGCCGGCGTGGGCAGCGTTGTTGCGCGAGTGTCTGGCTCCGATGGGGAGTTCGG CTGTGCTGCTCAGCGCGCCGAGCTGGGAGTCAGTCAGCAACCTGTTCGATGACAACCGCAGCGCGGTGTTGTTGACGATTCCTGCTCTCCAGCCAGCACC CGGCCGTTGCAACTTGCCGACCGTGTTGCTGCTTGAACACGAGCCGCTGGCGCCGCCCGACGGTGTGAGCGACTGGCTGGTGCGCGATCTGCTGGATCCC GGCATGTTGCGCCGCTGCCTGCGCCATGTGCGTGAGCGCGGCGTGCTGGAAAACACTTTGCAGCGCCTGGCCGAGCAGGACCCGTTGACCGGTATCGCCA ACCGTCAGGGTTTCCAGACCTTGCTGGCGGCGCGCCTGGCTGAAAACGAAGGCCGCGGGTTGGCCCTCGGTCACCTTGATCTCGACAACTTCCGACACGC CAACGACGCCCTCGGCCACCAGGCCGGCGATCGGTTGATCCTGCAAGTGGTCTCGCGGCTGAAAAGCCAACTGGAGGCCAGCGATCAACTGGCGCGGCTG GGCAGCGATGAATTCGCCCTGCTGATCGATACTCGCCGCGCCCCTCAGCGCGCCGAATGGATGGCCGAACGCATTACCGAAGCCCTGTCCGAACCCTATT GGGTCGATGGCGAAAGCCTGTTGATCGGTTCCAGCCTCGGCATCGCTCACGCACGAGCGCAGGCCGGCGCCGACCCATTGATGTGGCACGCGCACATCGC CATGCAGCAAGCCAAGAGCACTCAGGGCTGCACCTTTCACATCTTCAACGAACGGATCAATCGCAATGCCCGCAGCATCGCCGACCTCGAAAGCGAGCTG CGCCGGGCCTTGCGCCGCGATGAGCTGGAATTGCATTACCAGCCGCGCCTGAACCTTGAGGACGGCCAGATCGTCGGCCTCGAAGCCTTGGTGCGCTGGC GTCATGGCGAACGCGGCTTGTTGCCCCCCAGCGAATTCGTGCCGCTGGCCGAGCAAAGCGGCTTGATCGTGCCGTTGGGTTATTGGGTGATTTCCCGGGC CCTGCGGGACATGCAAGCGTTGCGCGAACGAGGTCTGCCAGCGCTGCACATGGCAATCAACCTGTCGTTCCGGCAGTTTCAGGACAGCCAGTTGCTGTCG ACCCTGAGCCGGCTGATTGCCGAGCGAGGCGTCGAGGCGCAATGGCTGGAATTCGAACTGACCGAAACCGCGGTGATGCGTCGCAGCGATCTGGTCAAGC AGACCATGGACGCCCTCGGGCGTTTGGGCGTGCGCTTCTCACTGGATGATTTCGGCACCGGGTTCTCTTCGTTCGTGCACCTTAACAGCCTGCCGATTGC CTTGTTGAAGGTCGACAAGAGCTTTGTCGGCGGCATGGAGGAGCGGGAAGAGAATCGCAAACTGGTCCACGCGATGATCAACCTGGCGCACAACCTCAAC CTCGAAGTGGTTGCCGAAGGCGTGGAAACGCTGGAGCAACTGGATTTGTTGCGCGGGTTTGGTTGCGATCAAGTTCAGGGATATCTGATCAGCAAGCCGT TGCCGTTGACGGAGTTGGTTGAGTATTTGACCTTCGGCAGCAGTCAGCAGCACGTACTGGAAGTCGTGAGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTCAGGCCCTGTAGGAGCGAGGCTTGCCCGCGAAGGCGTCGTGTCAGTCGACATTGTTGTTAACTGACACGACGCCTTCGCGGGCAAGCCTCGCTCCTA CAGGGCTAGGCGATCTCGAAATTCTGCTCTGACGACGGCTCCCGCCTGATCATCCGCTTCATCTTCCACTCAAACGCCAGTGTCAGACTCACCGCCGCAC ACGCCAGCCCCAGCGCCAACCCCCACCAGACCCCCGTTGGCCCCCAGTTCAAATGGAAGGCCATCCACCAGGCGGCCGGTGCGCCGATCAGCCAGTAGCA ACCCAAACCCACCAGGAATGTGGTCTTGGCATCCTTGAGCCCGCGGATGCAGCCCATGGCGATGGTTTGTGTGCCATCGAACAGCTCGAACCACGCCGCC ACTGCCAGCAGGCTCACGGCCAGGTTGATAACTTCGCGGAACGCCGGATCGTTGTGGTCCAGGAACAAGCCGATCAATTGATGCGGCAGCAGCCAAAAGA
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAEEPAWAALLRECLAPMGSSAVLLSAPSWESVSNLFDDNRSAVLLTIPALQPAPGRCNLPTVLLLEHEPLAPPDGVSDWLVRDLLDP GMLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLAARLAENEGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKSQLEASDQLARL GSDEFALLIDTRRAPQRAEWMAERITEALSEPYWVDGESLLIGSSLGIAHARAQAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSIADLESEL RRALRRDELELHYQPRLNLEDGQIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLPALHMAINLSFRQFQDSQLLS TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKVDKSFVGGMEEREENRKLVHAMINLAHNLN LEVVAEGVETLEQLDLLRGFGCDQVQGYLISKPLPLTELVEYLTFGSSQQHVLEVVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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