Pseudomonas lini DSM 16768, TU81_RS18460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 6_503430_25.999, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTGCACCAATCAGAACCTGCCGCGCAAGCTCAAGCTCGGCGACATCTGCATGGCCTGCGAAGAGACCCCGGAGTTCCTCAGCTTCCGCAACATCACCC CGGCCACGTCGAGTTTCGCACCGCCGCTGAACCGTGACTTCCTCTGGAAGCTGATCAGCAACATGTCGCTCAACTATCTGTCGCTGGCCGACGTTAATGC GTTGAAGGTGATTCTCGAAACCTACGACCTGCCGCGCTACTACGACCAACACGCGGAAAAAGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGTCGATCAAG CACCAACACGTCGACAGATTGCACCGAGGGTTGCCGGTACGCGGGTTGCGCACCGAGCTGACCATCGACCCGGAAGGGTATATCGGCGAGGGCGACCTGT TCGTGTTCGCTTCGGTTCTTAACGAGTTTTTCGCGCTTTACGCCAGTCTCAATTCGTTCCACGAGCTGCGGGTAAAAAGCACACAGGGAGAGGTGTACCA
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| DNA Sequence for Gene |
>TU81_RS18460
ATGGACACCACGTATGGGCCTGCAGCCCCTGCTTTAAGCGGGCTGACCCGGGTAATACGCGAGTACTCGCTGTTTCAGGCAGTGCTGCTGGTCATTGACC GGCTGCGCGATGCACACCCGCACCTGAGCGAAGACGACCTGTACGACCAGCTGGAATTCCAGGCCAATCCGAGCCTGGGTTTCCCTGGCAGCGACGTCGA TCGCGTGGAGTTTTTCAAAGAGCACGGGCAGATGCGTGCGCGTCTGCGTTTCAACCTGATTGGCCTGGTCGGTTCCGGTTCGCCGCTGCCGGCGTTCTAT GGCGAACAGGCCCTGGGTGACAGCGAAGACGGCAATCCGACCCGCAACTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGA AAAAATACCGCTACCGCGCAAGCTTCCAGAGCGGGGCGCTCGACCCGTTTTCGGCGCAGCTGTTTGCGTTGATCGGCCTCGGTGGCGAAGAGATCCGCAG GGCCCAGGAACTGAACTGGAAACGCCTGCTGCCGTACCTCGGTTTGCTCAGCTTGCGGGCGCACTCGGCGGCGCTGATCGAAGCGGTGCTGCGTTACTAC TTCAAGCACGCCGAACTGACCATCGAGCAATGCATCGAGCGCCGCGTCGAAATCCTCGACGAGCAGCGCAATCGCCTGGGCCGCGCCAACAGCCTGCTCG GCGAAGACCTGGTGCTGGGCGAACACGTGCGCGACCGCAGCGGCAAATTCCGCATTCACATCCGCGAGCTCGACTGGCAACGCTTCCACGAATTCCTGCC GATCGGTTTCGGCTATCAGCCGCTGTGCGCGCTGGTGCGGTTCACCTTGCGTGACCCGCTCGATTACGACATTCGCCTGGTGTTGCGCCAGGAAGAAATC CGCGAACTGCGCATCGGTGAGCAGAACGCCTGTCGCCTGGGGTGGACCAGTTGGCTGGGCCGCGAAAAAGCGGACGGCGTGGTGACCTTGGGCAGCAAAA TTCATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACGTGAGCATGATCAACGTAGACCTGCAACAACTCATCCAGGCGCTGGACGCCGAAACCCGCCGTGATCTGGAGCGTTCGGCCGAGCGTTGCGTCGCC CGTGGCGGCAGCAAGATCCTCGTCGAGGACTTGATGCTCGGCCTGCTGGAGCGTCCGAACGGCTTACTCGCACGCGCGTTGCAGGACGCCGATGTCGATG CCGGTGAACTCAGCGCCGCGCTGCAATCGCGGGTCGAACACAGCGCTTCGCGCAACCCGGTGTTCGCCCCGGAACTGGTGCAGTGGCTGCAAGATGCGCT GCTGGTGGCCAACCTCGAACTGGGTCAGACCCAGGTTGAAGACGCTGCGCTGATCCTCGCTCTGCTGCGCAATCCGATGCGCTACGCCGGCAGTCGCTAT CAGCCGCTGCTCGCCAAGCTGAACATCGATCGCCTGAAAGAATTTGCCCTGTCGCAACAGGAGCAACCGGCGGCTAACGGCAAACCGGCGGCGCAGGGCG
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| Amino Acid Sequence |
>type VI secretion protein
MDTTYGPAAPALSGLTRVIREYSLFQAVLLVIDRLRDAHPHLSEDDLYDQLEFQANPSLGFPGSDVDRVEFFKEHGQMRARLRFNLIGLVGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWKKYRYRASFQSGALDPFSAQLFALIGLGGEEIRRAQELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHAELTIEQCIERRVEILDEQRNRLGRANSLLGEDLVLGEHVRDRSGKFRIHIRELDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI RELRIGEQNACRLGWTSWLGREKADGVVTLGSKIH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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