Pseudomonas lini DSM 16768, TU81_RS18455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 6_503430_25.999, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAATTTGCAGGCGCCAAAGCCTCGAAGCTCGCGTCGGGGGCCGACCATGCTTAGCCGCGCGCAACTGAGTTTCTTCATGGTTGCCTTGTGGTGGCCATT GCTTGCTGTACTGACGATCTCTTCCTATCAGCTGTGGATTGGCGAGTACACGACGTTCGATTCATCCCACACCCATTGGGAGTACCTGTTGTGGTGGGGC ATTCCTGGGCTTTTGGGATTTTCGCTGTGGATGTCCCGATCCGCGAAGAGCCGAAACGAGCAACAAGCGCTGCGAATGGTCTGGTGGGCGCCGGTGAAGT TCATCCCTTTTTACATCGTGCCATGGGTGATTTATGGCGTGTGTTGTTTGATCGCTGGGCAGTCTCAGGACGCTTACATGGCGTTCGGCTGGACCATGGT TGTGCCTTTCCTACTGATCGCCGGTTATGTCTGTGCCGGCGTAACGGTCGCGCTCTACAGGATATTTTTTTGATGAGTACCACCACCAGGCAGGTAACCC
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| DNA Sequence for Gene |
>TU81_RS18455
ATGTCCTTTAACCACTACTACCAAAGCGAACTCACCGCACTTCGCCAGTTAGGTCGTCGTTTCGCCGAGCGTAGCCCGGCGTTGGCGCCTTTCCTTGGGC AGGCCGGGCGGGATCCGGATGTGGAGCGGTTGCTGGAGGGCTTTGCCTTTCTGACCGGTCGCCTGCGCCAGAAGCTCGACGACGAGTTGCCGGAACTCAG CCATTCGCTGATGCAGTTGCTGTGGCCCAACTACATGCGGCCGCTGCCGGCGTTCAGCATTTTGCAGTTCGACCCGCTGAAGCGTTCCGGGCCTGCGTTG AAGGTCGAGCGTGATACACCGGTGGAGAGTGTGCCGGTCGATGACGTGCGTTGCCGCTTCCGCACGTGCTACCCGACTGAAGTCCAGGCGCTGGATCTGG CCGCGTTGACCTACTCGGTGAAGGGCGATGGTTCGCTGTTGAGCCTGCGTTTGGAGATGAGCGCTGATGGTCACCTCGGCGAGCTGGAGCTGAGTCGTCT GCGTCTGCACTTCGCCGGTGAGCGCTACATCAGCCAGATGCTTTACCTGAGCCTGTTGCGCAACCTCGAAGGCATCGAGTTGATCCCGCTGGACGGCGCC GGCAAGCCCATCAACGGTGTGAACGGCCAGCCGATGGCGTTCAAGATGCCTGGCGACCGTGTGCAGCCGGTGGGTTTTGCCGAGGAAGAAGCGTTGATTC CGTATCCGCTGAACACCTTCCGCGGCTACCGCTATTTGCAGGAATACTTCGCCTTCCAGGACAAGTTCCTGTTCGTCGATGTCAACGGTCTGGATCTACT CAAGGCGCTGCCGGAAGACACGTTGAAGCAGATGCGCGGCCTGGAGTTGCGCTTCGATATTCGCAAGAGCGGCATCATGCGCATGCGGCCGACCCTGGAC AACGTGAAGCTCTACTGCACGCCAATCGTTAACCTGTTCGAGCACGACGCGCTGCCGATTCGCCTCGATGGCAAGCAGGACGAATACCTGCTGTTGCCGG CCGAATACGACCTGGAAAACTGCGGCGTGTTTTCGGTGGAAACCGTGACCGGCTGGAAGCCCGGCGGCCTCGGTTATCAGGAGTACGTGCCGTTCGAATC CTTCGAACACGACCCGAGTTTCGACGTGCCCACCAGCCGTCCGCATTACAGCATCCGCCAGCGTTCGTCCTTGCTGCACGACGGCCTCGACACCTACCTG AGCTTCGGCATCCGCCATACCGAAGCCCACGAAACCCTGTCGATCGAGCTGATGTGCACCAATCAGAACCTGCCGCGCAAGCTCAAGCTCGGCGACATCT GCATGGCCTGCGAAGAGACCCCGGAGTTCCTCAGCTTCCGCAACATCACCCCGGCCACGTCGAGTTTCGCACCGCCGCTGAACCGTGACTTCCTCTGGAA GCTGATCAGCAACATGTCGCTCAACTATCTGTCGCTGGCCGACGTTAATGCGTTGAAGGTGATTCTCGAAACCTACGACCTGCCGCGCTACTACGACCAA CACGCGGAAAAAGTCAGCAAGCGCCTGCTGGGCGGGCTCAAGTCGATCAAGCACCAACACGTCGACAGATTGCACCGAGGGTTGCCGGTACGCGGGTTGC GCACCGAGCTGACCATCGACCCGGAAGGGTATATCGGCGAGGGCGACCTGTTCGTGTTCGCTTCGGTTCTTAACGAGTTTTTCGCGCTTTACGCCAGTCT CAATTCGTTCCACGAGCTGCGGGTAAAAAGCACACAGGGAGAGGTGTACCAATGGACACCACGTATGGGCCTGCAGCCCCTGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGCTGACCCGGGTAATACGCGAGTACTCGCTGTTTCAGGCAGTGCTGCTGGTCATTGACCGGCTGCGCGATGCACACCCGCACCTGAGCGAAGACGA CCTGTACGACCAGCTGGAATTCCAGGCCAATCCGAGCCTGGGTTTCCCTGGCAGCGACGTCGATCGCGTGGAGTTTTTCAAAGAGCACGGGCAGATGCGT GCGCGTCTGCGTTTCAACCTGATTGGCCTGGTCGGTTCCGGTTCGCCGCTGCCGGCGTTCTATGGCGAACAGGCCCTGGGTGACAGCGAAGACGGCAATC CGACCCGCAACTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGAAAAAATACCGCTACCGCGCAAGCTTCCAGAGCGGGGC GCTCGACCCGTTTTCGGCGCAGCTGTTTGCGTTGATCGGCCTCGGTGGCGAAGAGATCCGCAGGGCCCAGGAACTGAACTGGAAACGCCTGCTGCCGTAC
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSLMQLLWPNYMRPLPAFSILQFDPLKRSGPAL KVERDTPVESVPVDDVRCRFRTCYPTEVQALDLAALTYSVKGDGSLLSLRLEMSADGHLGELELSRLRLHFAGERYISQMLYLSLLRNLEGIELIPLDGA GKPINGVNGQPMAFKMPGDRVQPVGFAEEEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDVNGLDLLKALPEDTLKQMRGLELRFDIRKSGIMRMRPTLD NVKLYCTPIVNLFEHDALPIRLDGKQDEYLLLPAEYDLENCGVFSVETVTGWKPGGLGYQEYVPFESFEHDPSFDVPTSRPHYSIRQRSSLLHDGLDTYL SFGIRHTEAHETLSIELMCTNQNLPRKLKLGDICMACEETPEFLSFRNITPATSSFAPPLNRDFLWKLISNMSLNYLSLADVNALKVILETYDLPRYYDQ HAEKVSKRLLGGLKSIKHQHVDRLHRGLPVRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASLNSFHELRVKSTQGEVYQWTPRMGLQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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