Pseudomonas lini DSM 16768, TU81_RS18265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 6_503430_25.999, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAATCGCCACCCGCGATCGCCTGCAACCGTCCCTGCTGGACCGGTTGACCGACGACGACCCGAGCAACCTCAAGGAAAGCGCCGACAAGCGCGTGCTCT CCCTGACCCAACTGAAAGCCTCGGTGCTGCGTGACTTGGCGTGGCTGCTCAACACCACTTCGTTGCTCAGCGCCGATGCGACGTTGCACACCCCGGCCGG CACGTCAGTGGTCAACTTCGGGCTGCCAGCCCTGGCCGGCAACAGTGCGTCGAACGTCGATATCGCGGCGCTTGAAGCACTGATCCACCAGGCTATCGCC ACATTCGAACCGCGGATTCTGCGTAATACTTTGCGCGTGCGGGCCCGGGCATCCGCCGAGATGAACCACAACGCCCTGAGTTTCGAGATCGAAGGCGATC TTTGGGCGCAGCCAGTGCCGCTGCGCCTGATGCTGCAAACCGATCTGGACCTGGAATCCGGCCATGTGCGAGTGGTCAACGCCGAACAGCGGAGACGCCC
|
|
| DNA Sequence for Gene |
>TU81_RS18265
ATGAATCCGCGCCTGCTGGAACTGTACAACCAGGAGTTGCATCACGTGCGCGAAAGCGCGGCGGAGTTCGCTCAGGAATACCCGAAAATCGCCAGTCGGC TGACGTTGTCCGGCATGGACTGCGCCGACCCGTACGTCGAGCGCTTGCTGGAAGGGTTTGCTTATCTGACGGCGCGAGTACAGCTCAAGCTCGACGCCGA ATACCCGACCTTCACCCACAACCTGTTGGAAATCGCTTACCCCCATTACCTGGCGCCGACACCGTCGATGACCGTGGTGCAATTGCAGGCCGACCCCGAT GAAGGCTCGCTGAGCAGCGGCTTCCCGCTTCCCCGGGACACGGTCCTGCGCACCGCCCTGGGCCGCGAAACCCAAACCTGCTGCGAGTACCGCACCGCCC ACGCGGTGACGTTGTGGCCGTTGCAGGTCAGCCAGGCCGAGTACTTCGGCAACCCGTCCGCCATGCTCGGGCGCTTGGCCGCCAGCGAACCCAAGGCCAA AGCCGGTCTGCGCCTGACCCTGCGCACCGGCGCCGAACTACCGTTCAACAGTCTGGCCCTGGACAACCTGCCGCTGTACCTCAACGGCGCAGACGAGCAG CCCTTCCGCCTCTACGAACAGCTACTGGGCAACGTCTGCGCCGTGTTCGCCCGTCAGCCCGGCGGTGATTGGGTGGAACGCCTGCCGCAGGATGCACTGC GCTCCCAGGGATTCGACGATACCGACGCCGCGCTGCCAGTGGTCTCGCGGGCCTTCCAGGGCTATCGCCTGTTGCAGGAATATTTCGCCCTGCCCCAGCG CTTTCTGTTTGTCGACTTCACCCAGTTGAGCCGGGCGGTCAAACGCTGCGACGGCCAGGAACTGGAGTTGATCGTGCTGTTCGACCGTCACGATCCGAGC CTGGAAGGCAGCGTCGGAGCCGCGCAGTTCCTGCCGTTCTGCACCCCGGCAATCAACTTGTTTCCCAAGCGCCTGGATCGCATCCACTTGTCGGAACGGG TCAATGAACACCATGTGATCGCCGACCGCACCCGGCCGATGGATTTCGAGATTCATTCCCTGACTACCCTCACCGGCCACGGCACCGGGTCGGAGCAGCC TTTTTTGCCGTTCTATGCGGTACGCGATCCGTCTCGTTACGGCCGCGATCAGGCCTGGTACACGGTGCGACGCGAACCCCGCGTGCTGTCCAGCGGCCAG CGGCGCAACGGCCCGCGCTCGACTTACATCGGCAGCGAAACCTTCGTCAGCCTGGTGGACAGCCAGCAGGCGCCTTATCGCCACGACCTGCGCCAACTGG GCGTAACAGCGTTGTGCACCAACCGCGACCTGCCGCTGTTCATGAGCGTGGGCAACAGCAAGACCGACTTCACCCTGGCCGACAGCGCACCGGTAGCGGC GGTGCGCTGCGTAGCAGGCCCGAGTCGCCCACGCGCCAGCCATGCCCATGACGCCAAGGCGTGGCGGTTGATCAGCCAGCTTTCGCTGAATTACTTGTCC CTCAGCGAACAAGGCCAAGGCGCCGCTGCCCTGCGCGAACTGCTGCGCCTGTACGGCGACAGCAACGATGCGGCGTTGCAATTGCAGATCGAAGGCCTGC GCGAAGTCAGCAGCAAGGCCTGCACCCGACGCTTGCCAATGCCCGGTCCGATCGTGTTTGGTCGTGGCCTGGAGATCACCCTGGAATTCGATGAAAACGC GTTTCGCGGCACTGGAGTCTTCTTGCTCGGTGCAGTGTTCGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACC ACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCGGACGCCGTCCGACCCTGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTACCCTGGACGCGATGCACCAGGAGCCCTGGGAATACGACTTCTTCCAGGCGTTGCGGCGCATCGAGTGCGAATCGCCTGACCTGCCGCGCCTGGGCCA TTCGTTGCGCCTGGCCGATGATCCGCTGCGCCTTGGGCAACAGGCCGATTGCACCTTCGCCCCGGCGACCCTGGCGTCAGTACAGCCGGGCGTCGACGGT GCGCCGGCGCGCCTGGAGCAGTTCTTTTTCGGCCTCGGCGGCCCCAACGGCCCATTGCCGCTGCACATCACCGAATATGTGCGCGAACGCCAGCGCAACA ACGCCGACAGCACCAGTAAACGCTTCCTGGATGTGTTCCATCACCGTCTGCTGAGCCTGTTTTACCGGGCCTGGGCCGAAGCGCGGCCGACGGTCAGCCA TGACCGCCCGGACGATGACTACTGGTCGGCACGCCTGGCGGCACTGAGCGGCCGGGGCATGCCGAGCCTGCTCAAACAAGGGCTGATCCCCGACACGGCG
|
|
| Amino Acid Sequence |
>type VI secretion system protein ImpG
MNPRLLELYNQELHHVRESAAEFAQEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQADPD EGSLSSGFPLPRDTVLRTALGRETQTCCEYRTAHAVTLWPLQVSQAEYFGNPSAMLGRLAASEPKAKAGLRLTLRTGAELPFNSLALDNLPLYLNGADEQ PFRLYEQLLGNVCAVFARQPGGDWVERLPQDALRSQGFDDTDAALPVVSRAFQGYRLLQEYFALPQRFLFVDFTQLSRAVKRCDGQELELIVLFDRHDPS LEGSVGAAQFLPFCTPAINLFPKRLDRIHLSERVNEHHVIADRTRPMDFEIHSLTTLTGHGTGSEQPFLPFYAVRDPSRYGRDQAWYTVRREPRVLSSGQ RRNGPRSTYIGSETFVSLVDSQQAPYRHDLRQLGVTALCTNRDLPLFMSVGNSKTDFTLADSAPVAAVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLS LSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKACTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRT TERGEIMRWKAKPGRRPTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|