Pseudomonas lini DSM 16768, TU81_RS15835

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 132 166 -
PANTHER PTHR30469 MULTIDRUG RESISTANCE PROTEIN MDTA - - 5 352 1.2E-65
Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain 52 257 6.1E-13
NCBIfam TIGR01730 JCVI: efflux RND transporter periplasmic adaptor subunit IPR006143 RND efflux pump, membrane fusion protein 31 349 3.7E-67
Coils Coil Coil - - 94 121 -
Gene3D G3DSA:2.40.420.20 - - - 261 350 7.1E-13
Gene3D G3DSA:2.40.50.100 - - - 53 195 2.2E-32
Gene3D G3DSA:2.40.30.170 - - - 47 255 2.2E-32
Gene3D G3DSA:1.10.287.470 Helix hairpin bin - - 88 161 2.2E-32
SUPERFAMILY SSF111369 HlyD-like secretion proteins - - 45 215 9.42E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.