Pseudomonas lini DSM 16768, TU81_RS15315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 4_731568_20.3369, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGGCTTTGACAGCTGCACTTCAAGGAACCACTGATGCGTAACCTCAAGCGCGTACTTCTCGCTGTATTTGTCCTGTTGCTCGTTCTCGCGATCCTGGCG TTCGTACTTGAGAACCAGCAAGGCGTGTCACTGCTGTTCCTGGGCTGGGCGGGCCCGCAGTTGCCAGTATCGCTGGTCATGGTGATTGCGCTGCTGATCG GCATGGTGATCGGTCCGATTCTCGGCTGGTTTCTGGGACGTACGTCCAGGGCCTCACGCAAACACCTTGTCTGATAGCGATAAACCCGTTGTACGCGTCG AATTTGCGCCATGGCTTGTCCATATCCATTAGTAAAACCTTCATTAAGCTGTAAAATGCTGCGCTTGGTCGATAGGGCGTTCCTGAATCGGTTCGGACTG ACTCTGTCAGAAGCCACGGCTGACTTGATGGCTTTTGCATTCATGGATTAGACAGTGCTCGGTTGACGGCCCTGTCAGCAACTCAAGGGTATGGTTTCGC
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| DNA Sequence for Gene |
>TU81_RS15315
GTGAAAATTCTAGTAACCGGCGGCGCCGGGTTTATCGGCTCGGCAGTCATTCGTCATATCATCTCCAACACTAACGACTCTGTCGTTAATGTCGATAAAC TGACTTATGCCGGTAATCTTGAGTCGTTGGCCGAAATTAGCCAGAACTCGCGCTACGTGTTCGAGCGCGTCGACATCTGCGACCGTGACCAAGTGGACCG CGTCCTGCGTGAACACCAGCCGGATGCCGTCATGCACCTGGCCGCAGAGTCCCACGTTGACCGCTCGATCTCCGGCCCGTCTGAATTCATTCAGACCAAC ATCATCGGCACTTATACCCTGTTGGAAGCTGCACGCCATTATTGGTCGGCACTGGATGATGCACGTAAAGCCAACTTCCGCTTCCACCATATTTCCACCG ACGAAGTCTACGGAGACCTCGAAGGTCCGGAAGACCTCTTCACCGAAACCACTCCGTATCAACCAAGCTCGCCGTACTCGGCCAGCAAGGCCAGCTCCGA TCACCTGGTTCGCGCCTGGAGCCGCACCTATGGCCTGCCGACTCTGGTTACCAACTGCTCGAATAATTACGGTCCCTGCCACTTCCCCGAGAAGTTGATC CCGCTGATCATTCTCAATGCACTGGAAGGCAAGCCGCTGCCTGTTTATGGCAAAGGCAACCAGGTCCGTGACTGGCTCTACGTCGAAGACCACGCCCGCG CGCTCTACAAAGTCGTGACTGAAGGCGTGATCGGCGAGACCTACAACATTGGCGGCCATAACGAGAAGCAAAACATCGAAGTGGTGCATACCCTTTGCGC ACTGCTCGACGAACTGCGTCCAGATTCCGCTCATCGTCCACATGCCAGCCTGATCACCTACGTTCAGGATCGCCCGGGCCACGACCAGCGCTACGCCATC GACGCCAGCAAAATCCAGCGCGAGCTGGGTTGGACGCCGGAAGAAACTTTTGAAACCGGTATCCGCAAGACCGTCGAGTGGTATCTCAACAATACTGAAT GGGTGGCTCACGTGAAGAGCGGCAGCTACCAGCAATGGATCGACCAGAACTACACGGGTCGTTCGGACAAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATCCTCCTGTTGGGAAAAAACGGCCAGGTGGGTTGGGAGCTGCAACGCTCGCTCGCGCCACTTGGCGAGTTGATTGCGCTGGATCGTCACTCGGTTGA TGGCTTGAGCGGCGACCTGTCTGACCTTGGCGCACTGCGTACGACTATCCGTCAGGTGAGACCTGACATTATTGTCAACGCTGCCGCTTACAACGCTGTG GATGAGGCTGAGTCCGAGACTCGCTTGGCCGACCTTGTGAATGGTCAGGCAAGCCAGGTGATGGCTGAAGAGGCTGCATCCCTGGGTGCCTGGCTGATTC ACTATTCGACCGACTACGTGTTCAATGGTGAAGGGCTGACACCATGGCAAGAGACAGATCCCGTTGCCCCGCTGAATCACTACGGCGTCAGCAAACTGGC CGGCGAGCAAGCGATTACTGCTTCGGGCTGCAAACACCTGATCTTCCGCACCAGTTGGGTCTATGGCGCTCGTGGCAATAATTTTGCCAAGACTATGCTG
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MKILVTGGAGFIGSAVIRHIISNTNDSVVNVDKLTYAGNLESLAEISQNSRYVFERVDICDRDQVDRVLREHQPDAVMHLAAESHVDRSISGPSEFIQTN IIGTYTLLEAARHYWSALDDARKANFRFHHISTDEVYGDLEGPEDLFTETTPYQPSSPYSASKASSDHLVRAWSRTYGLPTLVTNCSNNYGPCHFPEKLI PLIILNALEGKPLPVYGKGNQVRDWLYVEDHARALYKVVTEGVIGETYNIGGHNEKQNIEVVHTLCALLDELRPDSAHRPHASLITYVQDRPGHDQRYAI DASKIQRELGWTPEETFETGIRKTVEWYLNNTEWVAHVKSGSYQQWIDQNYTGRSDKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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