Pseudomonas lini DSM 16768, TU81_RS11640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 425 | 603 | 4.4E-58 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 600 | 842 | 1.4E-107 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 431 | 585 | 9.8E-48 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 604 | 855 | 6.8E-93 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 606 | 839 | 2.70627E-107 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 307 | 375 | 9.4E-6 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 378 | 419 | 1.9E-4 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 419 | 590 | 1.4E-61 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 606 | 837 | 9.9E-72 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 435 | 590 | 7.85E-48 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 295 | 424 | 2.4E-18 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 62 | 222 | 1.4E-14 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 298 | 417 | 4.89E-18 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 425 | 591 | 5.2E-41 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 192 | 850 | 0.0 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 605 | 847 | 2.48E-87 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 316 | 416 | 2.7738E-7 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 307 | 416 | 4.9E-9 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 431 | 588 | 2.34154E-61 |
| Coils | Coil | Coil | - | - | 594 | 614 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 426 | 587 | 2.4E-41 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 303 | 423 | 5.8E-14 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.