Pseudomonas lini DSM 16768, TU81_RS09100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 3_807828_15.6235, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCCTTTGGATTTTCTTGAATTGCAGCGCGGCTATGAAGCGGTGCTCGACTGGCTTGAAAAGACCCTGGAACTGATCCGCGCCGGTTACCGCAGCCTGGC GTTCGAACGCAGTGAACAGACCTTCTCGATTCAATTGCCCGATGACCAGCCGAGCCAACGGCTGGTCATCGGTTTGCGCATGCCCAACGGTGCCAGCGAG CAGGCCGCTAGCGAATGGTTGCGCGGGGCGATCATTGCGTCGCAGCCGCACATCGCACTGCTCAGTCGCCAGCGCATGAGCGGTTTGTCCCATCAGGCCA TGAGTCGCAATGAACAAGTGGCCTACAGCGTTGGCGACGATACGCGGTTGTTTGTGGTGACGGCCGAAGGCCAATGGTTCGACGGGCAGTTGCCGTTGCT GATTGCCGCACCGGCTTCCAGGCTGGCCAGCAGTCCATGGCAAGTGGTGTTGTTTGTGGCCCAGGCGAGTGAAAGTGCTTGATCAAGGAAGGAACGTCAT
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| DNA Sequence for Gene |
>TU81_RS09100
ATGTCTGAGGGCAATGTCGGGACAGGTACACGAGGCCTCCACGAAGCGCCGCTGAGCAGTGCTTTTCGTCAGGCCTGGCAGCAATGGTCCCAGGACTGGA ACCAGTTGCCCAAGGACAGCGAAGACGAAGCGCTGGTGGATGCGGTGGTCGAACTGTCCACGCAAATCTCCCAACGACTGTGGCGAACCGCATTCGCCAA AGTCGGTGACGCCGCCACCGAGCAAGTCAAGGCGCTGGTCTATGCCTTTGTCGCGCTGGTCGATGAAACCTTGCTGTTTACGCCGTGGCCCGGCCAATCG GCCTGGCAGGAAAAACCTTTGGAATCGCGGCTGTACGCCAGCCGTCAGGCCGGTGAGCGGATACCGCTGGCGATCAAGGAATTGCTGGACGAGCAAATCC CCACCACTCGCGATCTGGCCAATGTCTATTTGCAGTGTCTGGTGCTGGGGTTTCAGGGACGCCTGCGCGGCGAACAGAATCAGACCCAGCATGAAAAATG GCGCCTGGCGCTGTTCACCTTTGCCTGGCAGCACGAGGCGGATTATGCCGACGTCAGTGCCCGGCTCGAACAGCCTTCGGCGGTGCCGCCGATGCAATTG CCGGTGCGTCTTTCGTTGCCCGACGGTTTTCGCCTGGGCCTGGGGATTCTCGCCATGGTCCTGCTGCTGACCGGGCTGGGGCAGTTGTTCTGGCGTGACA TTCGTCTGGAGCTCGAACCGGTCTTGCAGATGACCGATTCCGTGACCGCCTCGGAGCAAGACTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGCTGGGGATTATCGGCCTCATCATCGCTGTGCTGTTGGTGCTGGCGATTGTCGGGGTGGCGGTCTGGTGGTTGCGCACGCAAAGCGGTGCGGCGAT TCGCAGTTTTTACCTGGCGGTGCGGCACATGGAGCAGGAGCAGGGCGCCCAGGACCGATACCAGATTCCATGGCTGCTGATGCTCGGCAACGAAACCCAG GGCACGCAGTTGTGTACTCAGTGGCGTTTGCAGCCCACCGACAAACCGGCCTGGTTCGGTCGCTGGTGGTCGGACCCTGAAGGTGCGGTGCTGGTGGTGC CTCAGGCGCTGTTTTTGCCGGATGAAGGCATGCACTTGCAACGCGGCGGTTGGTGGCGCTTGCTGGGATTGATCCTGCGCTTGCGCAGTCAACGTCCGCT GGACGGAGTGATCTGGACGGTGCCGGTCAGCCGGCTGGGCAACGTCGAGCAAGCCACGACTCTCGGGTTGGCGGCGCGTCGACGCTTCATCGATCTGCTG
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| Amino Acid Sequence |
>type VI secretion system protein ImpK
MSEGNVGTGTRGLHEAPLSSAFRQAWQQWSQDWNQLPKDSEDEALVDAVVELSTQISQRLWRTAFAKVGDAATEQVKALVYAFVALVDETLLFTPWPGQS AWQEKPLESRLYASRQAGERIPLAIKELLDEQIPTTRDLANVYLQCLVLGFQGRLRGEQNQTQHEKWRLALFTFAWQHEADYADVSARLEQPSAVPPMQL PVRLSLPDGFRLGLGILAMVLLLTGLGQLFWRDIRLELEPVLQMTDSVTASEQDS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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