Pseudomonas lini DSM 16768, TU81_RS09095

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas lini strain DSM 16768 3_807828_15.6235, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAAACCTTGCTGTTTACGCCGTGGCCCGGCCAATCGGCCTGGCAGGAAAAACCTTTGGAATCGCGGCTGTACGCCAGCCGTCAGGCCGGTGAGCGGATAC CGCTGGCGATCAAGGAATTGCTGGACGAGCAAATCCCCACCACTCGCGATCTGGCCAATGTCTATTTGCAGTGTCTGGTGCTGGGGTTTCAGGGACGCCT GCGCGGCGAACAGAATCAGACCCAGCATGAAAAATGGCGCCTGGCGCTGTTCACCTTTGCCTGGCAGCACGAGGCGGATTATGCCGACGTCAGTGCCCGG CTCGAACAGCCTTCGGCGGTGCCGCCGATGCAATTGCCGGTGCGTCTTTCGTTGCCCGACGGTTTTCGCCTGGGCCTGGGGATTCTCGCCATGGTCCTGC TGCTGACCGGGCTGGGGCAGTTGTTCTGGCGTGACATTCGTCTGGAGCTCGAACCGGTCTTGCAGATGACCGATTCCGTGACCGCCTCGGAGCAAGACTC
DNA Sequence for Gene
>TU81_RS09095
ATGAGCACGCTGGGGATTATCGGCCTCATCATCGCTGTGCTGTTGGTGCTGGCGATTGTCGGGGTGGCGGTCTGGTGGTTGCGCACGCAAAGCGGTGCGG CGATTCGCAGTTTTTACCTGGCGGTGCGGCACATGGAGCAGGAGCAGGGCGCCCAGGACCGATACCAGATTCCATGGCTGCTGATGCTCGGCAACGAAAC CCAGGGCACGCAGTTGTGTACTCAGTGGCGTTTGCAGCCCACCGACAAACCGGCCTGGTTCGGTCGCTGGTGGTCGGACCCTGAAGGTGCGGTGCTGGTG GTGCCTCAGGCGCTGTTTTTGCCGGATGAAGGCATGCACTTGCAACGCGGCGGTTGGTGGCGCTTGCTGGGATTGATCCTGCGCTTGCGCAGTCAACGTC CGCTGGACGGAGTGATCTGGACGGTGCCGGTCAGCCGGCTGGGCAACGTCGAGCAAGCCACGACTCTCGGGTTGGCGGCGCGTCGACGCTTCATCGATCT GCTGCAACGGTTCGGGCTGAGCCTGCCGGTGTACGTGGTCATTACCGGCATGGAAGAGTTGCCGGGCTTTCAGGAATTGATCACCGCGCTGCCGGTCGAG GCTCGCGAACGCACATTGGGCTGGTCTTCGCCCCACGGGACCGATGCGGTCTGGCAGGCGCAATGGAGCGATCAGGCGCTGGATCAAGTTACTCGGGCCT TGGCGGAATCGATCATCGAAATCGGCGCCTTGTCCGGGCAGTTGAGCAGCGAGCTGTATGGCTTGCCGGAACGATTCGAAGCTATGCGGCGCCATCTGCA ATCTTTGCTGGAACCAGTCTTCCAGGGCAATGCTCAAGGCGAGGCGCCGCGTTTTCGCGGTATTTATTTCACTGCCAATCAGCCCTCGGAAGACAGCGTC GACGGATTCTCTGCCTACGACACCGGGTTGCAGCAGAGCGCCTTCGCCCGGCAATTGTGGCAGCGGCGGGTGGTCGCCGAGCGCGGTCTGGCCCAGGTGG TGCCGCGTCTGTTACGCCTGCGTCAGCGCTGGCAACGCGTGACCGGCGGGGTGGCGCTGGTGGTTGCGTTGGTCTGGGGCGCGGGCATGCTGTGGGTCTG GCAGGATTCGGTCAAGGAGGCCCATGAACTGTCGCGGCTGCTGCAAGGGGCGCAGAAAAACTACGCGGCGGTCACCGATGAATCTCATCGGCTGGAGTCG ACCCGGCGCAACGTCCAGAGCTTCTGGCGAGTGCTGGAAAAGGCGCCGGGCTGGAGCTTCACCTCAGTGGTATTTCCGACTTCCTGGTTCTCTTCGCTGG ATGCGCAGCTGGCAAGCGAGTTGCGCCTGACTGCCCACAGCCATTTGATGCTGCCGTTGCGTGATCTGTTGAGCGCGGAACTGGCGCAACTCAAGACCAT TCGCAACACCGAACGCCGGGGCAACGTCGAAAGCGAAGATCCAGCCCAATGGCAAAACTACGTCAAGGCCAAGGATCTGGTGGAGCGCGCGGTGAATCTG GAACAGCAGAACCAGTGGTTCAATCAGGCGCTGAACAACCCCAAGGCTCCCCTCGAAGATCTGGTGTTGCTGAGTAACAACGCGTTGTCGCTGAACCTCA ACGTTGGCACGTTGCACCGCGCCGGTTTTTACAACCGGGCGTTGTTCGATGCTGATGGCAGCGACTTGCGACCGCTGGATCTGACCGTCGAGCGCCCGGT GATCGAGGAAAATTTCCTCGGCCTCATGGAGCGCTGGCTGGACCAGTATTTCCTGGCCGACAATTTCGTGCGCCAGGCCGGTTATCTCAAGCTGCATCTG GAACGGCTGGAAGCCGGCAGTGGCAACTCCCTCACCGAGCTCGAAGATTTGCGAGCACTGGTCGATGATCTGCAAACCGTGATCGGCTTGACCAATTCGG CGTGGGGCCGCGGCAAAGGGCAGGATCTGGTACCTGGTTATCGCGAGTTGCTGGACAACGTGCGCAAAAGCGCCTTGCTCGGACCGCAACTGGAACAACA GTTGGAAATGCAGGCGGCCAAGCTGCAGCAGAGCTTTCGCGATCAATGGATCGTCCAGGCCGGCTCCCGGGATAATTTATTGATTCAGCAAGGCAGCGGG CAACTGGTCTTGCAGGAACATGTGGTGCAGCTCAACAACGCGGTACAGGCGTTGTTCAAGCGTGACTTTGTGGCCATCGCCTTACACGCGGATCGCTCCG AAGCCCCGAATGGGCAAGGGCAGGGCGTTGATGGCGACGACCTCGACAGTGCGCTGAACTATTTCGCCAGCTACAAAAGTTACGCCGCCGAAGAGTTGCC ACGCATTCCTCCGGTGTATCGCGGTGCCTTGCTGCAAGCGGCCGAAGGCGCAGTGGTCAAGGCCATGTTGTCGAGCCTGCGTGAGCACAATGCTCAGGTC CATAGCGGCGTTTTCAATGTGCAGGCCTCCCAGGCGATTGCCTTGCAGAAAGCCTTTATCGAGGTGCGTCGCAGTGATCTGGCCACGCGTTTGCAAACTG CCTTGAACCGCCGCGCCTTGGCCGAAATCGTCAGCGGCCTCGACGAAATCGTCGCCCAGCCGCTGTTCAGCGGGCGTACCGAAATCAGCCAGTGGGACGG CTCGAAGAACCTCGGCCTGCACCTGTATGGCGCCAACGACGTGCAGGATTTGAAACTGAGCCTCAAGCAGCAATTCAACACCATGCTCGGCATCACCGAG CGCCGCACATCGGCGCTGGAATGGCTGAAAGTCCAGCAACAGAACCTCTCGGCGCTGGATTATGAACGCGTGACGCAGTTCAATGCGCTCAACGACGAAC TGCTCAAGTACAAGGAGCAGAACCCCGCCAGTTCGCCGGCGCAGATAGAGCAGTTGGTGAGCCGCGACTTCATCGAAATGGACGCCACGTCCTGTGGCCA GATTCTGCAAACCGCCAACCTGTCTGGCGGGCGCGGAACACTGGCGTTGCGGGCGGTGGATCTGCAACAAACCGCCATGCAACGCTGCCAGTTCCTGCAA CAGCAACAGGCCGCGGCAGCGTGGAACGACCTGGCCAATTATTTCAATCAGTACCTGGCGGAGCGCTTTCCGTTTGCCAATGGCCTTCAAGCCGCCGACG CCGATCCAGCTCGAGTCCAGCATCTGCTGGAACTGATCGACAAGCGTTTGCCGGTGGCACAGGCCGGACTACTGCTGAGCCAGACCCCGGAACGCCTGGC CGCCGAAGACTTTCTCAATCGTCTGAAGCAAGCCAGCACCTGGCTGGGCCCGATGTTTGTACGCGACAAGAGCGGTGTGTTGGGGCTGGAGATGGACGTG CGCTGGCGCACCGATCGAGAGGAAGAGCGCGGCGCCGATCAGGTGATTGCCTGGGGCTTGAATGCCGGCAATCAACAGCTCAGCTACCCCGGTGAGGCCC AGCCGAACCTGCGCTGGATGGTCGGTCAACCGGTCCGTCTGACCTTGCGTTGGGCTCGAAATGGCTACCAGCGTCCGGCCAACGATCCGTTACAGCCGAG CCTGGTGGTGCGAGATCTGGAAGCCGGCTGGGAGTACAGCGGTCCGTGGTCGTTATTGCGCTTGATGCGCTCGCACGTGTCGGTGCAGCGCCAGCCGAAC ATGGATTACACGGACTTTCCGTTGACCTTGCGCCTGCCCGTGACGACGCAGGCCAGCACCACCACCGCCGAGCAAACCCTGATGTTTGTGCGCTTGTCGT TGATGACCCAGGGCTCGAAATTGCCGCTGTCCATTCAGCCCTTGCCAACTCGGGCCCCACGCTCACCGTTCATGGTGACGAGATCGACCGCGGGCATTGA AACCCATGACATCGAATCCCAAAAGGAGGGCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATCAACCTTCAACGCCGTTGCCGGAACTGATTACCCAACTGCTCGGACCGATCAGCCTGGAGGCCCCCTGTGGCCAGGACCTGCGTTATGAGCCTGAGTT CGACCGGTTGCGCGAACTGCGCCGTGAGGACGACACCAGTTTGCCCACGGGGGTGTGGCAGGCGTCGATCAAGCGCGGCCAATGGCCGGAACTGGAAAAA CTGACCACCAGCCTGCTGCTCGAACGCAGCAAGGATTTGATGCTCAGCGCCTGGCTGGGTGAGGCCTGGTTGCATCAGGACGGACTCGAAGGTTTGCCGG GCAGCCTGGCGCTGGTGGCCGGGTTATGCGAGCGCTATCCCGAGCACCTGCACCCCCAGGCTGAGGACGGCGATCAGTCATGGCGGGTGATACCGCTCGA ATGGCTGGCTCGACGCTACGCTGAAGTGCTGCTGACCCGAGTGCCGCTGTTCGAGCCGCGCAACAATGAATTCGATAGTTTCTGTCTGGATGCCTGGCGT
Amino Acid Sequence
>type VI secretion system protein ImpL
MSTLGIIGLIIAVLLVLAIVGVAVWWLRTQSGAAIRSFYLAVRHMEQEQGAQDRYQIPWLLMLGNETQGTQLCTQWRLQPTDKPAWFGRWWSDPEGAVLV VPQALFLPDEGMHLQRGGWWRLLGLILRLRSQRPLDGVIWTVPVSRLGNVEQATTLGLAARRRFIDLLQRFGLSLPVYVVITGMEELPGFQELITALPVE ARERTLGWSSPHGTDAVWQAQWSDQALDQVTRALAESIIEIGALSGQLSSELYGLPERFEAMRRHLQSLLEPVFQGNAQGEAPRFRGIYFTANQPSEDSV DGFSAYDTGLQQSAFARQLWQRRVVAERGLAQVVPRLLRLRQRWQRVTGGVALVVALVWGAGMLWVWQDSVKEAHELSRLLQGAQKNYAAVTDESHRLES TRRNVQSFWRVLEKAPGWSFTSVVFPTSWFSSLDAQLASELRLTAHSHLMLPLRDLLSAELAQLKTIRNTERRGNVESEDPAQWQNYVKAKDLVERAVNL EQQNQWFNQALNNPKAPLEDLVLLSNNALSLNLNVGTLHRAGFYNRALFDADGSDLRPLDLTVERPVIEENFLGLMERWLDQYFLADNFVRQAGYLKLHL ERLEAGSGNSLTELEDLRALVDDLQTVIGLTNSAWGRGKGQDLVPGYRELLDNVRKSALLGPQLEQQLEMQAAKLQQSFRDQWIVQAGSRDNLLIQQGSG QLVLQEHVVQLNNAVQALFKRDFVAIALHADRSEAPNGQGQGVDGDDLDSALNYFASYKSYAAEELPRIPPVYRGALLQAAEGAVVKAMLSSLREHNAQV HSGVFNVQASQAIALQKAFIEVRRSDLATRLQTALNRRALAEIVSGLDEIVAQPLFSGRTEISQWDGSKNLGLHLYGANDVQDLKLSLKQQFNTMLGITE RRTSALEWLKVQQQNLSALDYERVTQFNALNDELLKYKEQNPASSPAQIEQLVSRDFIEMDATSCGQILQTANLSGGRGTLALRAVDLQQTAMQRCQFLQ QQQAAAAWNDLANYFNQYLAERFPFANGLQAADADPARVQHLLELIDKRLPVAQAGLLLSQTPERLAAEDFLNRLKQASTWLGPMFVRDKSGVLGLEMDV RWRTDREEERGADQVIAWGLNAGNQQLSYPGEAQPNLRWMVGQPVRLTLRWARNGYQRPANDPLQPSLVVRDLEAGWEYSGPWSLLRLMRSHVSVQRQPN MDYTDFPLTLRLPVTTQASTTTAEQTLMFVRLSLMTQGSKLPLSIQPLPTRAPRSPFMVTRSTAGIETHDIESQKEGL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site