Pseudomonas lini DSM 16768, TU81_RS07895

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01750
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00028
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00028 Cobyric acid synthase [cobQ]. IPR004459 Cobyric acid synthase CobQ 1 486 213.840591
CDD cd05389 CobQ_N IPR047045 Cobyric acid synthase, N-terminal domain 6 227 1.23428E-122
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 254 446 5.9E-40
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 258 406 3.1E-15
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 4 240 1.1E-59
CDD cd01750 GATase1_CobQ IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 261 443 1.84732E-68
Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain IPR011698 CobB/CobQ-like glutamine amidotransferase 253 436 6.7E-58
PANTHER PTHR21343 DETHIOBIOTIN SYNTHETASE - - 6 485 0.0
NCBIfam TIGR00313 JCVI: cobyric acid synthase CobQ IPR004459 Cobyric acid synthase CobQ 7 479 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 5 240 5.09E-55
Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain 7 233 1.0E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.