Pseudomonas lini DSM 16768, TU81_RS07030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 2_928492_19.6844, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACAACTGAATGCAGTCAATCGCTTCTTCAATCAACAACTGAGCTTTCAGGACGACACGCGTATCTGGCGTCAGACCGATTACTGGGCCACGCCCGTC GAATCCTTGATCAAGGGCGCCGCCGACTGCGAGGACTACGCCCTGGCGAAATATTTCAGCCTGCGACACCTCGGAATTCCCAGCGAGAAACTGCGCATCA CCTACGTCAAGGCCCTGACCCAGAACCAGGCGCACATGGTGTTGACCTTCTACAGCAGCCCCACGGCCGATCCGCTGGTGCTGGACAACCTGATCGGCGA GATCCGTCCCGCTTCCCAACGCAAAGACCTGTTGCCGGTGTACGCCTTTAACGCCGAAGGCCTGTATTTGCCGGGAGCCAATGGTGGCAAACGCAGCAGC GACTCGAAAAAACTGTCGCGCTGGCAAGACGTGTTGAAAAAGATGCAATTTGAAGGGTTCGCCGTGGGCGAAGGCTAGCCGTTACTGCAAGGAGCGTTTT
|
|
| DNA Sequence for Gene |
>TU81_RS07030
ATGTCACTGCGCAAACAGTTGTTCCTCGCCATTTGCCTGTTTTTGCTGGTGGCCTTCGGCGGCAGTTTTTTTGTCAGCCTGGAAAGCTCTCGCGAACAGA TGCTTGGCCAATTGCGCTCCCACGCCCAGGACGCCGCCACGGCGCTGGGCTTGTCATTGACTGCGCAGATCGATGACCCGGCGATGATCGAATTGATGGT CAGCTCGATTTTCGACAGTGGTTATTTCAGCAGCATTCGGGTCGTCAATATTGTGGATGAACGGGTGCTGGTGGAACGCAGCACACCGGCGCAAATCGAG GGTGTTCCCGGCTGGTTCATCAGCCTGGTGAACCTGCGCCCACAGGGTGGCGATGCACTGATCATGCGTGGCTGGGAGCAAGCGGCTCGGGTCGAAGTGC TAAGCAATCCGCAATTCGCCCTGGCCAAACTCTGGGATAGTACCCTCGGCAGTCTGATCTGGTTGTTGATTTGCGGACTGCTCAGCGCCGTGTTTGGTGG CTGGCTGTTGCGCCGGCAATTGCGCCCGCTCGACAAGATGGTCAAACAGGCTGAAGCCATCAGCAAGCGCGAGTTCCGCAGTTTGCCGAAACTGCCGCGC ACCCCGGAGCTCAAACGCGTGGTGCTGGCTATGAACCAGATGGTGGAAAAACTCAAGGCGCTGTTCGAAGAAGAGGCCGCGCGCAGCGAAAAACTGCGGT CCGATTCTTATCAGGACAGTCTTACGGGTTTAGCCAACCGGCGTTTGCTGGATGAGCAACTGGCCGACCAACTACTGGTTTCCGAGCAAAGCTGCGACGG CCATTTGCTCATGCTGCGGATCAATGACCTGATCGGCCTAAACCAACGTCTGGGCGGCCAGCGCACCGATACCCTGATTGGCGCCGTCGGCGAACTGCTC AAACGCCTGACGCAACCACCGGAACGTCGAACCTGGCTCGCGGCGCGCAATCGGGGTGGCGAATTCAGCTTGCTGACCCCGGGCCTGGACCATAAGGACG CCGTACGCCTGGCTTCCGAAATCAGCGCCACCCTGGAAAACCTGCGCCTGACCGGTGCCAGCGACTGCATGCCGGTGGCGCACTTGGGCGTCGTCGCCTA CTCCCCCGGCGAACCGGCGAACGATGTGCTGCTGCGCCTGGATCAAGCGCTGACCCAGGCCCGCCAGCACCCCGAGCGGCCGTGGATACACTTGGCCTAT TCCGATACCGCACCGAACCAGACCCAACACGACTGGCGCAGCTGGATCGACGATGCACTGACCGAGGGCAAGATGCAGCTGTATTTTCAACCGGTGGTGC AATGCGCCGATACCAGCCAGGTGTTGCATCACAAAGTCCTCGCCCGTCTGCTCGACCCGCAAGGCGAGGCGATTGCCGCCGGGCATTTCCTGCCGTGGAT CGAGCGCCTTGGCTGGTCGGCACGGTTCGACCTGGCGATGCTGGAAACCACCCTGGAATACCTCGCCGCCAACCGTTGGCCGCTCGCGCTGAGCCTGTCC GGCAGCACTCTGCGCGATCAGACCCAGCTGAAACTGATCTGCGACATACTTGAATCACTGCCGGAGCTGGCGCCGCTGCTGACCCTGGAAATCGACGAAC GCCAACTGCCGCCCCCCGAAGAGTTGCAACGCCTGAGCCATAGCCTGCTCAACACCGGTTATCGCATCGGTTTGCAGCACTTCGGCGGCAACTTCAGCCA GATTGGCAACCTGACGCAACTGGGGCTGGCTTACCTGAAAATCGACGGAGCCTACATTCGGGGTATCAATGAACAGACTGACAAGCGCCTGTTCATCGAA GCGATTTTCCGGGCGACCAACAGTATTGATTTGCCGTTGATTGCCGAGATGGTGGAGACGCAGGGGGAGTTGGAAGCGATTCGGGAGTTGGGGTTGTTTG GGGTGATGGGAAGACTGATTGGGCCGCCGGAGCCGATGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAATCAAAAAGATCAAAAGATCGCAGCCTGCGGCAGCTCCTACGCCAACCGCATTGGCCCGGATATACGCGATCACGCTCCCCACCGCTTTTCAGGGCCG GCGATCCTCGACCCGAGCCTGACTCTTGCTCCAATCAGTCAGCAGGCTGTAAGCCACGGCCAACAATGTCGGGCCGATGAACAGACCGATAAACCCAAAT GCAATCAACCCGCCAAACACCCCGAGCAGCACAATCACCAACGGCAAATTCCCGCCCCGACTGATCAGGTACGGCTTAAGCACGTTGTCGACCCCGCTGA TGATGAACGCCCCCCAAATCCCGAGGAACACCGCCATCCCGTACTCGCCCTTCCAGGCCAACCACGCCGTGGCCGGAATCCACACCAACGGCGGCCCCAT CGGAATCAGGCTCAGCAAAAATGTCACAACCCCCAGCACCAGCGCCCCCGGCACGCTGGCAATCAGGAAGCCGATCAACGCCAGCACTGCCTGAGCCGCC
|
|
| Amino Acid Sequence |
>DeoR family transcriptional regulator
MSLRKQLFLAICLFLLVAFGGSFFVSLESSREQMLGQLRSHAQDAATALGLSLTAQIDDPAMIELMVSSIFDSGYFSSIRVVNIVDERVLVERSTPAQIE GVPGWFISLVNLRPQGGDALIMRGWEQAARVEVLSNPQFALAKLWDSTLGSLIWLLICGLLSAVFGGWLLRRQLRPLDKMVKQAEAISKREFRSLPKLPR TPELKRVVLAMNQMVEKLKALFEEEAARSEKLRSDSYQDSLTGLANRRLLDEQLADQLLVSEQSCDGHLLMLRINDLIGLNQRLGGQRTDTLIGAVGELL KRLTQPPERRTWLAARNRGGEFSLLTPGLDHKDAVRLASEISATLENLRLTGASDCMPVAHLGVVAYSPGEPANDVLLRLDQALTQARQHPERPWIHLAY SDTAPNQTQHDWRSWIDDALTEGKMQLYFQPVVQCADTSQVLHHKVLARLLDPQGEAIAAGHFLPWIERLGWSARFDLAMLETTLEYLAANRWPLALSLS GSTLRDQTQLKLICDILESLPELAPLLTLEIDERQLPPPEELQRLSHSLLNTGYRIGLQHFGGNFSQIGNLTQLGLAYLKIDGAYIRGINEQTDKRLFIE AIFRATNSIDLPLIAEMVETQGELEAIRELGLFGVMGRLIGPPEPM
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|