Pseudomonas lini DSM 16768, TU81_RS06955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 2_928492_19.6844, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGACCTGCTGCGCTGCAGTCGTGGTGAGTTGTTCGGCCCAGGTAACGCGCAACTGCCCGCCCCGAACATGCTGATGGTCGATCGCATCACCCATATCA GCGAAGAGGGTGGCAAGTACGGCAAGGGTGAATTGGTCGCCGAGCTGGATATCACTCCAGACCTGTGGTTCTTCGCCTGCCACTTCGAAGGTGATCCGGT AATGCCGGGCTGCCTGGGCCTCGATGCCATGTGGCAACTGGTCGGTTTCTTCCTCGGCTGGCAAGGTCTGCCGGGCCGCGGACGCGCCTTGGGTTCGGGC GAAGTGAAATTCTTTGGCCAGGTACTGCCGACCGCCAAGAAAGTCACCTATAACATCCATATCAAACGCGTCCTGAAGGGCAAGCTGAACATGGCCATTG CCGATGGTTCGGTGACCGTCGACGGCCGCGAAATCTATACCGCCGAAGGCCTTCGGGTCGGCGTTTTCACCTCCACTGACAACTTCTAAGGGTTATCCGC
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| DNA Sequence for Gene |
>TU81_RS06955
ATGCGCCGCGTCGTTATCACTGGTCTGGGCATCGTTTCGTGCCTGGGCAATGACAAAGAGACCGTCTCCGCTAACCTGCGTGCAAGCCGCCCTGGCATCC GGTTCAACCCGGAATATGCTGAAATGGGTCTGCGTAGCCAGGTTTCCGGCTCCATTGACCTTCCCCTCGAAGAGCTGATCGATCGCAAGATTTTTCGCTT CGTCGGCCACGCGGCGGCTTACGCCTATCTGGCCATGAAAGACGCCATCGCAGACTCCGGCCTGACCGAAGAGCAGGTTTCCAACGTGCGTACCGGCCTG ATCGCCGGTTCCGGTGGCGCGTCGACCTTGAACCAGATGGAAGCGCTGGACATCCTGCGTGAGAAAGGCGTCAAGCGCGTCGGCCCGTACCGCGTCACGC GGACCATGGGCAGCACCGTTTCGGCTTGCCTGGCCACGCCGTTCAAGATCAAGGGCGTGAACTACTCGATCTCCTCCGCGTGCGCCACCAGTGCTCACTG CATCGGTAACGCTGTGGAGCAGATCCAGTTGGGCAAACAGGACATCGTGTTCGCCGGTGGCGGTGAAGAAGAACACTGGAGCCAATCGTTCCTGTTCGAC GCCATGGGCGCACTGTCCAGCCAGTACAACGAAACCCCGGAAAAAGCTTCCCGTGCCTACGACGCCAAGCGTGACGGTTTCGTCATCGCCGGCGGTGGCG GCATGGTCGTGGTCGAAGAGCTGGAACACGCCCTGGCCCGCGGCGCGAAGATCTACGCGGAAATCGTTGGCTACGGCGCGACCTCTGACGGCTACGACAT GGTCGCTCCAAGCGGCGAAGGCGCCATCCGCTGCATGCAGATGGCCATGGCCACCGTCGACACCCCGATCGACTACCTGAACACCCACGGCACCTCGACT CCGGTCGGCGATGCCATGGAAATGAAAGGTGTGCGTGAAGTGTTCGGTGACAAGGCCCCGGCCATCAGCTCCACCAAGAGCCTGTCGGGTCACTCCCTGG GCGCCGCTGGCGTTCACGAAGCGATCTACTGCCTGCTGATGATGGAAGGCAACTTCATGGCGGGTTCCGCCAACATCGACGAACTGGACCCGGAAGTGGC AGACATGCCAATCCTGACCAAGACTCGCGAAGACGCCGCCATCAACACCGTGATGAGCAACAGCTTCGGCTTCGGTGGCACCAACGCCACGCTGGTACTG AAGCGCTGGCAGGGTAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCCCGCCGCTTCGCCGTAAACAAAAACGCCCCGACTGGTTCGGGGCGTTTTTTTTGCCTCTGCTTTCCTGTAGGAGCCAGGCTTGCCGGCGAAGGCG TCCTTGAGTAGGTCTTCGCCGGCAAGCCTGGCTCCTACAGGTAATCAGGTTCAAATTCGTGGTTTTGCTCTTCGCAAACATGAAACATTTGTCATGAAAC TCAATGGCCTGCGACTGAATGTCACGTATTTAGCGGGCTGCAGGACTTTTGCCGATTCTGCAAAAATGGGTTGCCGAACTCTGTCGTTTACTTAGCCAGC TAACAAAATATATAACAAAGGCCTGCACACGCCTTGCTGCAGATAACAGAGATTGGAGCTAGCAGATGACTGTAAAAGTAACTGAACGCGACGATTCACA TATGTCCCATGAAGGCATCGCCGCCGGTATCCGCATCTGGGATGTACATCAACAAGACCTGCTGGTCGGGATGTTCCACTCCGAGACCGAAGCCCACAAG
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| Amino Acid Sequence |
>3-oxoacyl-ACP synthase
MRRVVITGLGIVSCLGNDKETVSANLRASRPGIRFNPEYAEMGLRSQVSGSIDLPLEELIDRKIFRFVGHAAAYAYLAMKDAIADSGLTEEQVSNVRTGL IAGSGGASTLNQMEALDILREKGVKRVGPYRVTRTMGSTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEEHWSQSFLFD AMGALSSQYNETPEKASRAYDAKRDGFVIAGGGGMVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGAIRCMQMAMATVDTPIDYLNTHGTST PVGDAMEMKGVREVFGDKAPAISSTKSLSGHSLGAAGVHEAIYCLLMMEGNFMAGSANIDELDPEVADMPILTKTREDAAINTVMSNSFGFGGTNATLVL KRWQGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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