Pseudomonas lini DSM 16768, TU81_RS05575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 2_928492_19.6844, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGTCGGTTTTCTCGGCGCCGCGCAAGTCGACCGCTTCGGCAACATCAACACCACGGTGGTGGGTGACTACCATCAGCCGAAAGTTCGCCTGCCGGGTG CCGGTGGCGCGCCGGAGATCGCCGGTTCCGCCAAGAGCGTGCTGATCATCCTCAAGCAGTCGGCGCGTTCCTTTGTCGACAAACTCGACTTCATCACTTC GGTCGGTCATGGCGAGGGCGGTGATTCACGCAAGCGTCTCGGCCTGCCGGGCGCCGGTCCTGTCGGCATTATTACCGACCTGTGCATCATGGAACCTGAA GCGGACACCCATGAATTCGTGGTCACCGCGCTGCACCCAGGCGTGACCCGCGAGCAAGTGATTGCGGCCACCGGTTGGGCGATTCGTTTTGCCGATCAGG TGGAAAACACCGCCGAGCCAACCGATGTCGAGCTGACCGCGCTGCGCGATCTGGAAGCCCGCACCGCTGCAGCCCACGGCCAAGCACCCGGAGAAGCCTG
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| DNA Sequence for Gene |
>TU81_RS05575
ATGCGTGACGTATATATCTGTGACGCCATTCGCACCCCCATCGGCCGTTTCGGCGGCGGCCTGTCGGCGGTTCGCGCCGATGATCTGGCCGCCGTGCCGA TCAAAGCGCTGATGGCGCGCAACCCGTCGGTAGACTGGAACGCGGTAGACGAAGTGTTTCTCGGCTGTGCTAACCAGGCCGGCGAAGACAATCGCAACGT TGCGCGTATGGCGCTGTTGCTGGCCGGATTGCCGGAAACCATTCCCGGCGTGACCCTCAACCGCCTCTGCGCTTCGGGCATGGATGCCATCGGCACCGCG TTCCGTGCTATCGCCAGCGGTGAGATGGAGCTGGCGATTGCCGGCGGCGTCGAGTCGATGTCCCGTGCGCCCTTCGTGATGGGCAAGGCCGATGCCGCGT TTTCGCGCAACATGAAACTGGAAGACACCACCATTGGCTGGCGCTTCATCAACCCATTGATGAAAGCCCAATACGGCGTCGATGCGATGCCGCAGACCGC CGACAACGTGGCCGATGACTACCAGGTTTCCCGCGCCGATCAGGACGCGTTCGCCCTGCGCAGTCAGCAACGCACGGCGGCCGCGCAAGCCGCAGGATTT TTTGCCGAAGAAATCGTCGAAGTGCGGATTGCCCACAAGAAGGGTGAAAGCGTCGTTACACAAGACGAGCATCCCCGTGCCGACACGACATTGGAAACCC TGGCCAAACTCAAACCGGTCAATGGCCCGGACAAAACCGTTACCGCTGGCAACGCTTCCGGTGTGAACGATGGTGCGGCGGCGCTGATTCTGGCCTCCGG CGACGCGGTGAAGAAACATGGCCTGACTGCCCGCGCTCGGGTGTTGGGCATGTCGAGTGCCGGGGTCGCACCTAGGGTGATGGGCATCGGCCCGGTGCCA GCGGTGCGCAAATTGACTGAGCGCCTGGGCCTGGCGGTCAGCGATTTCGATGTGATCGAACTCAACGAAGCCTTCGCCAGCCAGGGCTTGGCCGTGCTGC GTGAACTGGGGTTGGCGGATGACGCAGCCCAGGTCAACCCGAACGGTGGCGCCATTGCCTTGGGTCATCCGCTGGGCATGAGCGGTGCACGCTTGGTACT GACCGCGCTGCATCAACTGGAAAAGACCGGTGGCAAGAAAGGTCTGGCGACCATGTGCGTCGGTGTCGGCCAGGGTCTGGCCTTGGCGATCGAACGCGTC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGTAGCAGTGACTAATAAGAACTGAGGAATGCTTCATGACTGACAAGCCTGGTTACCGCCGCCCGCAAGAGGGCACCCAGCCGGAGTACCTGCACCCG GCCTATCAATCCACCAACCTTCGCTCGCCGTCCAAGCCGTTGGTGTTTTTGCCTCATTCGCTGTCGGAAATCACCGGGCCGACCATTGGCGCCGATCGCA TCGAGGAGCAGGACAACGACCTGACGGCGCAGCATCAGGGGGAGCCACTGGGTGAACGGATCATCATCCACGGCCGTGTGCTGGATGAAAACGGTCTGCC GGTGCCGGGGATTCTGGTGGAGATCTGGCAGGCCAACGCCGCCGGTCGCTACAACCATCCGCGCGACCTGCACGACGCGCCGCTGGACCCGAACTTCACC GGCACCGGTCGCACCGTGACCGACGCCGATGGCTGGTATCAGTTTCAGACCATCAAGCCCGGCGCCTATCCGTGGGGCAACCACCACAATGCCTGGCGCC
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| Amino Acid Sequence |
>beta-ketoadipyl CoA thiolase
MRDVYICDAIRTPIGRFGGGLSAVRADDLAAVPIKALMARNPSVDWNAVDEVFLGCANQAGEDNRNVARMALLLAGLPETIPGVTLNRLCASGMDAIGTA FRAIASGEMELAIAGGVESMSRAPFVMGKADAAFSRNMKLEDTTIGWRFINPLMKAQYGVDAMPQTADNVADDYQVSRADQDAFALRSQQRTAAAQAAGF FAEEIVEVRIAHKKGESVVTQDEHPRADTTLETLAKLKPVNGPDKTVTAGNASGVNDGAAALILASGDAVKKHGLTARARVLGMSSAGVAPRVMGIGPVP AVRKLTERLGLAVSDFDVIELNEAFASQGLAVLRELGLADDAAQVNPNGGAIALGHPLGMSGARLVLTALHQLEKTGGKKGLATMCVGVGQGLALAIERV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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