Pseudomonas lini DSM 16768, TU81_RS04040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 1_993897_13.5493, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACAACCAGGTCAACCCGAAGACAGGCACCATCCGCGGTCGTGCGGTGTTCGACAATAGCGACGGCACCTACACCCCGGGGCTTTATGCACGCCTGAA ACTGGTGGGTAGCGGCACTTACTCCGCGGTGTTGATCAACGACGAAGCAGTCGGTACCGACCTGGGTAAAAAGTTCGTGCTGGTGATGGATGCCGACAAC AAAACCGCTTACCGCCCTGTCGAGCTGGGTCCGAAGATCGAAGGTCTGCGCATCGTGCGCAGCGGCCTGAACAAGGACGACACCATCATCGTCAAGGGCT TGCAGCGGGTTCGCCCTGGCTCACCGGTCACCCCTGAGGTGATCCCGATGGCCAGCGAACAAACTCTCGCGGCTCTCGCACAACAACGAAAAGCGCTGGA AGCCAGCAACCTGCCCCAAATCGCACCTGCCAAGGTCGCGCCGGGTGCGGTTGTGAAAGTGGCTGCTGCGACTCCACGCGGTTAAGGGACAATTACTCCG
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| DNA Sequence for Gene |
>TU81_RS04040
ATGAATTTTTCCCAATTCTTCATTTCACGGCCGATCTTCGCAGCGGTACTGTCGCTGCTGATCCTGATCGCCGGCGCCATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCGGAAGTCGTGCCACCGACCGTTGTGGTGCGTGCCAACTTCCCGGGTGCCAACCCTAAAGTCATCGGTGAAACCGTGGCCGCTCCGTT GGAGCAAGCCATCACCGGCGTCGAGAACATGCTGTACATGTCTTCGCAGTCCACCGCCGACGGCAAGATCACCCTGACCATCACCTTCGCTTTGGGCACT GACCTGGACAACGCGCAGGTACAGGTTCAGAACCGCGTGACCCGGACCGAACCCAAACTTCCCGAGGAAGTGACGCGCATCGGTATCACCGTGGACAAGG CTTCGCCCGACCTGACCATGGTTGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTGTCCAACTACGCCTTGCTCAACATCAAGGATGA GCTGGCGCGTCTGGGCGGTGTCGGTGATGTGCAGCTGTTCGGTATGGGCGATTACTCGCTGCGGGTGTGGCTCGATCCGAACAAGACCGCTTCGCGCAAC CTGACCGCCACCGATGTGGTCACCGCGATTCGTGAACAAAACCGTCAAGTGGCGGCCGGTGCCCTGGGCGCTCCGCCTGCGCCGAATGCCACCGCGTTCC AGTTGTCGGTCAACACCCAAGGCCGTCTGGTTTCCGAGGAAGAGTTCGAGAACATCATCATTCGCTCCGGCGAGAACGGTGAAATCACTCGCCTCAAAGA CATCGCTCGCGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGTTCCTTGCTGAACAACCAGCCGGCGGTGGCGATCCCGATCTTCCAGCGCCCTGGTTCC AACGCGATCCAGATCTCCAACGACGTTCGGGAGAAAATGGCCGAGCTGAAGAAGAACTTCCCGGAAGGCATGGACTTCAGCATCGTCTATGACCCGACGA TCTTCGTGCGCGGCTCCATCGAGGCGGTGGTTCACACCCTCTTCGAAGCACTGATCCTGGTTGTGCTGGTGGTGATCCTGTTCCTGCAAACCTGGCGCGC ATCGATCATCCCGTTGGTGGCGGTGCCGGTTTCGCTGATCGGTACGTTTGCCGTGATGCACCTGTTTGGCTTCTCATTGAACGCCCTGTCGCTGTTCGGG CTGGTACTGGCCATCGGTATCGTGGTCGACGATGCGATTGTGGTGGTGGAAAACGTCGAGCGAAACATCGGGCTCGGATTAACCCCTATAGAAGCCACCA AACGTGCGATGCGCGAAGTGACCGGCCCGATCATTGCGACGGCGCTGGTGCTGTGTGCGGTGTTTATCCCGGCTGCGTTTATCTCCGGGTTGACCGGGCA GTTCTATAAACAGTTCGCCCTGACGATTGCGATTTCGACCGTGATCTCGGCCTTCAACTCGCTGACCTTGTCGCCGGCGCTGGCCGCCGTATTGCTCAAG AGCCATGACGCACCGAAAGACCGTTTCTCCAAGGTTCTGGACAAGATCTTCGGTGGCTGGTTGTTCCGTCCGTTCAACCGCTTCTTTGACAAGGCCAGCC ATGGTTATGTTGGCACCGTGGGCCGGGTTATCCGCAGCAGCGGTATCGCCCTGCTGGTGTACGCCGGCTTGATGGTGCTGACCTTCTTCGGGTTCTCCAA TACCCCGACCGGTTTCGTACCCGGCCAGGACAAGCAATACCTGGTGGCCTTCGCGCAACTGCCGGACGCCGCGAGCCTGGACCGTACCGAAGACGTGATC AAGCGCATGTCCGACCTGGCCCTGAAACAGCCTGGCGTGGAAAGTGCCGTGGCCTTCCCGGGTCTGTCGATCAACGGTTTCACCAACAGCCCGAACGCCG GCATCGTGTTCGTCACCCTGAAGCCTTTCGACGAGCGCAAGGATCCGAGCATGTCCGCCGGTGCGATTGCCGGTGCATTGAACGGTCAGTACGCCGGGAT TCAGGAAGCCTACATGGCGATCTTCCCGCCGCCGCCGGTACAAGGCCTGGGGACCATTGGTGGTTTCCGTCTGCAGATCGAAGACCGGGGCAACCTGGGC TATGACGAGCTGTACAAAGAAACCATGAACATCATCACCAAAAGCCACAGCGTGCCGGAACTGGCTGGCCTGTTCACCAGTTACACCGTGAACGTGCCGC AGGTCGATGCCGCCATCGACCGGGAAAAAGCCAAGACCCACGGCGTGGCCGTCAGCGACATCTTCGACACCCTGCAGATTTATCTGGGCTCGCTGTATGC CAACGACTTCAACCGCTTCGGTCGCACCTATCAGGTCAACGTTCAGGCTGAGCAGCAGTTCCGCCTCGAATCGGACCAGATCGGTCAGCTGAAAGTGCGT AACAACCGTGGCGAGATGATCCCGTTGGCGACCTTCATCAAGGTCAGCGACACCTCGGGGCCGGACCGTGTGATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGTGCGGCAGCCCCCGGCTACAGCTCCGGCCAGGCCGAGAAAGCCATCGAGAAACTGCTCAAGGACGAATTGCCCAACGGCATGACCTACGA GTGGACCGACCTGACCTACCAGCAGATTCTGTCCGGCAACACGGCGCTGTTCGTGTTCCCGCTCTGCGTACTGCTGGCGTTCCTGGTACTCGCGGCTCAG TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTTCCGATGACCCTACTGTCGGCCATTACTGGTGTGATTGCCTCGGGTGGCGATAACAACA TCTTCACCCAGATCGGCTTGATCGTACTGGTGGGACTTGCGTGTAAGAACGCGATTCTGATCGTCGAGTTTGCCAAGGATAAACAGGAAGAAGGCCTCGG CCCGCTGGCAGCAGTGCTGGAAGCTTGCCGTCTGCGTCTGCGGCCGATCCTGATGACCTCCTTCGCATTCATCATGGGTGTTGTGCCTCTGGTTTTCTCC AGCGGTGCCGGTGCCGAAATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGTTGCTGACGCCGGTGTTCT ACGTACTGATTCGCAACTTTGTGGAGCGCGGTGAAGCGCGCAAAGCCGCCAAGGCGCTGAAATTGGAAAAGCAACTGGAGGCGCAACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGAAAGCCTTCCTGCCGAGCCTTCTGGTACTGGCCCTGAGTGCCTGCGCCGTCGGCCCGGACTACAAAACCCCAGCTACGGAGGCGGCCAACATCAC GGCCGCCACCGATGGCAGCGCCGGTCAGAAGAATTTCGACCGTGCACGTTTCGAAGGCATCTGGTGGCAGCAGTTCGACGATCCAACCCTCAACCAGTTG GTGACGCAATCCTTGCAAGGCAACCGTGATTTGCGCGTGGCCTTCGCTCGCTGGAAAGCGGCCCGGGCAATTCGCGACGACGCCAGCAATGACGCCATGC CGACCATCACCAGCCGCGCGAGCAGTGATCTGGCCAAAGGACAGATTCCCGGCCAGACCACTAAACGCGTCAGCAGTGAACGCTATGACCTGGGCCTGGA CATGGCTTGGGAACTGGACTTGTTCGGTCGCATCCAGCGCAACCTGGAATCCAGCGACGCTGAACAGCAGGCGGCCGAAGCCGATCTTTACCAACTGCAA
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| Amino Acid Sequence |
>transporter
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNATAFQLSVNTQGRLVSEEEFENIIIRSGENGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIQISNDVREKMAELKKNFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLTPIEATKRAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK SHDAPKDRFSKVLDKIFGGWLFRPFNRFFDKASHGYVGTVGRVIRSSGIALLVYAGLMVLTFFGFSNTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQYAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETMNIITKSHSVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLESDQIGQLKVR NNRGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIASGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGLGPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERGEARKAAKALKLEKQLEAQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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