Pseudomonas lini DSM 16768, TU81_RS28485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lini strain DSM 16768 15_73473_23.158, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGTTCGTCTGTACTAATACACAGACGATCGTAGCAAGCTTCTGCCAAGCCCGGCTCTCAGCCGGGCTAATGGCATTTGCGGACAACGCTTGATGCTTC ACCGTCAAAGCCGCAGACGCGACCGAGACAAATCTGCTTCACAGCGTCAGACCTGGCTCTTTTGCCAGCGGTGCACGTCTTTTCTGACGAGCCTTCCAAG GCTACTGACGAGCACACCCACTGATTCCTCTCACGACGATCAGCCCAAGGCACCTTCTTGCGTGCCCGCTTATGAGCTATCCGAGGCCAATGACTGGCCG TCGCCGGATTCAGCGAAACACTTTCAAATAGTCGAATACTGATTGGTACTAACGTCAGTGGATTTTCGGCAGATACACTTCCCGACAGCGATTACGCAGA CGACACCGGTCGAGCCGCACACCCTGCGCGCCTCAAACAACGACCCGCGTTTGGCCGCCCTTCGTTTTGGGTCCATTTCAGCGCAGATGACGAGAACGCC
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| DNA Sequence for Gene |
>TU81_RS28485
ATGGCCGGGCTAATTCCCCAGAGCTTCATTGACGACCTTCTGAACCGCACCGACATCGTCGACGTGGTCAGCTCGCGCCTGCAAATGAAAAAAGCCGGCA AGAACTACACTGCCTGCTGCCCGTTTCACAAAGAGAAAACCCCCTCCTTCAGCGTCAGCCCCGACAAACAGTTCTATTACTGCTTCGGCTGTGGCGCTGG CGGTAACGCCCTCGGCTTCATGATGGACCATGACAACCTGGATTTCGTCCAGGCTGTCGAAGAGCTGGCCAAAGCCGCCGGCATGGAAATTCCCCGCGAA GAAAGCGGCCGGCCGCACAAACCGCGCCAGCCTACTGATTCGCCGCTGTATCCGCTGCTCACCGCTGCCGCCGACTTTTATCGTCAGGCCCTGAAAAACC ATCCGTCGCGCAAAGCCGCCGTGGATTATTTGAAGGGTCGTGGACTAACGGGTGAAATCGCCCGGGATTTCGGCCTCGGCTTTGCCCCACCCGGCTGGGA CAATCTGTACAAGCACTTGAGCAGCGATACCCTGCAGCAAAAGGCCATGATCGATGCCGGCCTGCTGATCGAGAACGCCGAAACCGGCAAGCGCTATGAC CGCTTCCGCGATCGCGTGATGTTCCCGATTCGCGACAGTCGCGGGCGCATCATCGCCTTCGGCGGCCGAGTGCTGGGCGACGACAAGCCGAAATACCTGA ACTCACCGGAAACCCCGGTATTCCATAAGGGCCAGGAACTCTACGGCCTTTATGAAGCACGCAAGAACAACCGCAACCTCGACGAAATCATCGTCGTCGA AGGCTATATGGACGTCATCGCCCTCGCCCAGCAAGGCCTGCGCAATGCCGTCGCAACCTTGGGCACCGCCACCAGCGAAGAGCACTTGAAGCGCCTGTTT CGCGTCGTGCCCAACGTACTGTTCTGCTTCGACGGCGACCAGGCGGGACGAAATGCCGCCTGGCGGGCGCTGGAGGCAACCCTGCCTTGCCTGCAGGACG GACGCCGGGCGCGCTTTCTGTTCCTGCCCGAAGGCGAGGACCCGGACACCTTGGTCCGCTCCGAGGGCACTGACGCCTTCCGCGCGCGAATCAATCAGCA CGCCCAGCCGTTGGCCGATTACTTTTTTCAACAGTTGACCGAGGAATCGGACCCGCGCTCCCTCGAAGGCAAGGCCCACATGGCCACCCTCGCTGCGCCG CTGATCGACAAAGTCCCGGGCGCCAACCTGCGCATCTTGATGCGCCAGCGCCTGAGCGAAATTACCGGGCTTAGCGGTGAAGCCGTGAGCCAACTCGTGC AAAGCACGCCTCAGCCTCAGGAAGCGCCACCCGCTTACGATCCGGGCATCGATTACGACGCCATGCCGGATTACAGCGACTACCATCAGCCGCAGGCGCA AGAGATGTACGCGCCGCAGCAGGAATGGACGCCGAAAAAGCCTGGCGCAGGCGGCAAGAAGTGGGACAAGAAGCCGTGGGACAAGAACGGCAAACGTGGC GGCGATCGCGATCAACCGCGCGCGCCAAGGGTGCCGGCCGCTGTAGAGCCGCCCACCCTGGCCGCCTTGCGCACGCTACTGCATCACCCGCAACTGGCCG AGAAAGTCGAGGATGCCGGGCACTTCGCTGCCGAGGACCATACCAACACGCAACTGTTGGTCGCCCTGCTCGAAGCCGTACAGAAGAATCCCAAGCTAAA CTCATTTCAACTGATTGCGCGTTGGCACGGCACCGAACAAGGCCGACTGCTCAAAGCGCTGGCAGAAAAGGAATGGCTGATTGATGGAGATAACCTTGAA CAACAGTTTTTCGACACCATTACTAGCTTGTCAGCCCGCCAACGCGAGCGAAACCTGGAACAACTTCTTCGAAAAGCACGTCAAAGTGAATTGAGCACCG AAGAGAAAAATCAACTGCGCGACCTTTTAAGTCGCAATGTTTCCGCATCAAGCCCGACCTCAACTGGCGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCATAGCTCAGGTATAATCCTCGGCTTGTTTTTTGCCCGCCAAGACCTTCAGTGGATAGGGTGTTATGTCCGGAAAAGCGCAACAGCAGTCTCGTATC AAAGAGTTGATCACACTTGGTCGTGAGCAGGGCTACCTGACTTACGCTGAGGTCAACGACCACCTGCCGGAGGATATTTCAGATCCGGAACAGGTGGAAG ACATCATCCGCATGATTAATGACATGGGGATCAACGTATTCGAGGTTGCGCCAGATAAGGATTCCCTTATGCTGGCCGACGCCGATACCGACGAAGCCGC GGCCGAAGAGGCAGCAGCAGCGTTGGCAGCGGTCGAGACCGACATTGGTCGCACCACCGACCCAGTGCGCATGTACATGCGTGAAATGGGTACGGTAGAG CTCCTCACACGTGAAGGCGAAATCGAAATCGCCAAACGTATTGAAGAGGGCATCCGCGAAGTGATGGGCGCAATCGCGCACTTCCCTGGCACGGTTGACC
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| Amino Acid Sequence |
>DNA primase
MAGLIPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGCGAGGNALGFMMDHDNLDFVQAVEELAKAAGMEIPRE ESGRPHKPRQPTDSPLYPLLTAAADFYRQALKNHPSRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQQKAMIDAGLLIENAETGKRYD RFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF RVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRSEGTDAFRARINQHAQPLADYFFQQLTEESDPRSLEGKAHMATLAAP LIDKVPGANLRILMRQRLSEITGLSGEAVSQLVQSTPQPQEAPPAYDPGIDYDAMPDYSDYHQPQAQEMYAPQQEWTPKKPGAGGKKWDKKPWDKNGKRG GDRDQPRAPRVPAAVEPPTLAALRTLLHHPQLAEKVEDAGHFAAEDHTNTQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIDGDNLE QQFFDTITSLSARQRERNLEQLLRKARQSELSTEEKNQLRDLLSRNVSASSPTSTGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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